miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7685 5' -64.6 NC_001973.1 + 61202 0.67 0.464163
Target:  5'- -gCGCUCGGGCGGGC-GCcggCGCUCc- -3'
miRNA:   3'- gaGCGGGCCCGCUCGuCGa--GCGGGcu -5'
7685 5' -64.6 NC_001973.1 + 83835 0.67 0.461543
Target:  5'- gCUCGaauCGGagagagagcggcacGCGAGCgAGCUCGCCCGc -3'
miRNA:   3'- -GAGCgg-GCC--------------CGCUCG-UCGAGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 62579 0.67 0.455459
Target:  5'- gCUCGagCGGGCGcAGCGacGCgUCGCUCGAg -3'
miRNA:   3'- -GAGCggGCCCGC-UCGU--CG-AGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 10455 0.68 0.438321
Target:  5'- -cCGCCCGucucGGCcAGCAGCcacaCGCCCGu -3'
miRNA:   3'- gaGCGGGC----CCGcUCGUCGa---GCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 73606 0.68 0.429892
Target:  5'- -gCGaCCCGGGCGAucaguucgGaCGGCUCGCCg-- -3'
miRNA:   3'- gaGC-GGGCCCGCU--------C-GUCGAGCGGgcu -5'
7685 5' -64.6 NC_001973.1 + 25926 0.68 0.421558
Target:  5'- gCUCGCCgccgCGGGCGGGCucg-CGgCCGAg -3'
miRNA:   3'- -GAGCGG----GCCCGCUCGucgaGCgGGCU- -5'
7685 5' -64.6 NC_001973.1 + 80003 0.68 0.421558
Target:  5'- -aCGCCCGGGUuggccAGCAGCU--CCCGGc -3'
miRNA:   3'- gaGCGGGCCCGc----UCGUCGAgcGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 140925 0.68 0.413323
Target:  5'- -cCGCCUguaccugguGGGCGAGUugauGGCUCGCCa-- -3'
miRNA:   3'- gaGCGGG---------CCCGCUCG----UCGAGCGGgcu -5'
7685 5' -64.6 NC_001973.1 + 132538 0.68 0.413323
Target:  5'- -cCG-CCGGGCGcGGCGGCggGCUCGAg -3'
miRNA:   3'- gaGCgGGCCCGC-UCGUCGagCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 24118 0.69 0.397153
Target:  5'- gUCGCugagCCGGGCGAGCucgcggguGCgcgcgcCGCCCGc -3'
miRNA:   3'- gAGCG----GGCCCGCUCGu-------CGa-----GCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 83032 0.69 0.397153
Target:  5'- uUCGgC-GGGCGAgGCGGCgCGCCCGu -3'
miRNA:   3'- gAGCgGgCCCGCU-CGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 76457 0.69 0.381396
Target:  5'- cCUCGCCaaGGacauGGGCGGCUCggcgguGCCCGAc -3'
miRNA:   3'- -GAGCGGgcCCg---CUCGUCGAG------CGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 121299 0.69 0.381396
Target:  5'- gUCGCCCGcGGCGcGCgccGGCggaCGCgCCGAc -3'
miRNA:   3'- gAGCGGGC-CCGCuCG---UCGa--GCG-GGCU- -5'
7685 5' -64.6 NC_001973.1 + 56532 0.69 0.373676
Target:  5'- --aGCUCGGGCgGGGCgGGCUCgGCgCCGAg -3'
miRNA:   3'- gagCGGGCCCG-CUCG-UCGAG-CG-GGCU- -5'
7685 5' -64.6 NC_001973.1 + 70122 0.69 0.369094
Target:  5'- -gCGCCCGcGGCGAugucgagcauggugcGCAGCgCGUCCGc -3'
miRNA:   3'- gaGCGGGC-CCGCU---------------CGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 55751 0.69 0.351158
Target:  5'- aCUCGCUCGGGaacgaGGGCAGaUCGUCuCGGc -3'
miRNA:   3'- -GAGCGGGCCCg----CUCGUCgAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 90316 0.7 0.343869
Target:  5'- gUCGgC-GGGCGAgGCGGUgCGCCCGAu -3'
miRNA:   3'- gAGCgGgCCCGCU-CGUCGaGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 77663 0.7 0.33669
Target:  5'- uUgGCCaccgaccGGCaGAGguGCUCGCCCGAc -3'
miRNA:   3'- gAgCGGgc-----CCG-CUCguCGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 70355 0.7 0.32962
Target:  5'- uUCGa-CGGGCGAGCGGC-CGCUgGGu -3'
miRNA:   3'- gAGCggGCCCGCUCGUCGaGCGGgCU- -5'
7685 5' -64.6 NC_001973.1 + 35980 0.7 0.322661
Target:  5'- uUCGCCgCGGacgagGUGAGCGGCaUGCCCGc -3'
miRNA:   3'- gAGCGG-GCC-----CGCUCGUCGaGCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.