miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7686 3' -55.1 NC_001973.1 + 109714 0.66 0.963853
Target:  5'- gGCGCUCGaUCGCGugUCGuugcACGGcUUGCg -3'
miRNA:   3'- gUGCGAGC-AGUGC--AGC----UGCCaAGCGg -5'
7686 3' -55.1 NC_001973.1 + 62612 0.66 0.963853
Target:  5'- gACGCgUCGUg--GUCGACGcGcgCGCCg -3'
miRNA:   3'- gUGCG-AGCAgugCAGCUGC-CaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 33682 0.66 0.963853
Target:  5'- uGCGCUUGUU-CGUCGACa---CGCCc -3'
miRNA:   3'- gUGCGAGCAGuGCAGCUGccaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 4236 0.66 0.960468
Target:  5'- gGCGCUCGuUUGCGUgagCGGCGcGUaCGCg -3'
miRNA:   3'- gUGCGAGC-AGUGCA---GCUGC-CAaGCGg -5'
7686 3' -55.1 NC_001973.1 + 39877 0.66 0.960468
Target:  5'- gCACGCUCGgcggCACcggccgguuguuGUCGAagaCGGagUGCCg -3'
miRNA:   3'- -GUGCGAGCa---GUG------------CAGCU---GCCaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 55645 0.66 0.960468
Target:  5'- -uCGCUCaagCGCGUCGgAUGGga-GCCg -3'
miRNA:   3'- guGCGAGca-GUGCAGC-UGCCaagCGG- -5'
7686 3' -55.1 NC_001973.1 + 42105 0.66 0.960468
Target:  5'- aGCGCcgcCGUCGCG-CGACacUUUGCCg -3'
miRNA:   3'- gUGCGa--GCAGUGCaGCUGccAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 83463 0.66 0.960468
Target:  5'- cCGCGCUCGUCGaggaggaggUGUgGuCGGUgaagacggCGCUg -3'
miRNA:   3'- -GUGCGAGCAGU---------GCAgCuGCCAa-------GCGG- -5'
7686 3' -55.1 NC_001973.1 + 69682 0.66 0.95687
Target:  5'- gGCGCg-GUCGCGUgcaGACGGUcgaugcauucgaUgGCCg -3'
miRNA:   3'- gUGCGagCAGUGCAg--CUGCCA------------AgCGG- -5'
7686 3' -55.1 NC_001973.1 + 1879 0.66 0.95687
Target:  5'- uCACGUccugCGcUAUGUCGGCcauucGGUUUGCCa -3'
miRNA:   3'- -GUGCGa---GCaGUGCAGCUG-----CCAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 133735 0.66 0.953054
Target:  5'- gGCGCccgucucgggCGUCACGUUGaacGCGGgcacgUCGUCc -3'
miRNA:   3'- gUGCGa---------GCAGUGCAGC---UGCCa----AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 88552 0.66 0.953054
Target:  5'- cCACGC-CG--GCGUCGGCGcg-CGCCc -3'
miRNA:   3'- -GUGCGaGCagUGCAGCUGCcaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 88704 0.66 0.953054
Target:  5'- aCGCGCUCuuGUCGgcaGUCGAaccGUUCGCa -3'
miRNA:   3'- -GUGCGAG--CAGUg--CAGCUgc-CAAGCGg -5'
7686 3' -55.1 NC_001973.1 + 120617 0.66 0.953054
Target:  5'- cCACGC-CGccuaUCugGUgGACGaGcgCGCCg -3'
miRNA:   3'- -GUGCGaGC----AGugCAgCUGC-CaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 126287 0.66 0.953054
Target:  5'- gGCGCUCgGUCAUGcUCGAgCGcacCGCCu -3'
miRNA:   3'- gUGCGAG-CAGUGC-AGCU-GCcaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 55583 0.66 0.951467
Target:  5'- aGCGCaCGUCGCGagUCaACGGggacagauccgcgUCGCCg -3'
miRNA:   3'- gUGCGaGCAGUGC--AGcUGCCa------------AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 88969 0.66 0.949018
Target:  5'- -cCGCUCGUCcagcacGCaGUCGACGGccUGCa -3'
miRNA:   3'- guGCGAGCAG------UG-CAGCUGCCaaGCGg -5'
7686 3' -55.1 NC_001973.1 + 32044 0.66 0.949018
Target:  5'- aCAUGCgCaUCGCGUugcCGGCGGUgCGCUg -3'
miRNA:   3'- -GUGCGaGcAGUGCA---GCUGCCAaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 32847 0.66 0.949018
Target:  5'- gACGCUgcucuugguuuUGUUuCGUCGACGGggcaCGCUa -3'
miRNA:   3'- gUGCGA-----------GCAGuGCAGCUGCCaa--GCGG- -5'
7686 3' -55.1 NC_001973.1 + 6336 0.66 0.948602
Target:  5'- uGCGCcgCGUCgugugcgGCGUCGAgGGg--GCCg -3'
miRNA:   3'- gUGCGa-GCAG-------UGCAGCUgCCaagCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.