miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7686 3' -55.1 NC_001973.1 + 121777 1.11 0.003288
Target:  5'- cCACGCUCGUCACGUCGACGGUUCGCCu -3'
miRNA:   3'- -GUGCGAGCAGUGCAGCUGCCAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 4904 0.75 0.53175
Target:  5'- cCGgGUUCGUUaucgugacggaaACGUCGGCGGgcucgUCGCCg -3'
miRNA:   3'- -GUgCGAGCAG------------UGCAGCUGCCa----AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 91519 0.75 0.541493
Target:  5'- cCACGCguagCGUUuugacuuggACGcCGGCGGUUCGUCg -3'
miRNA:   3'- -GUGCGa---GCAG---------UGCaGCUGCCAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 90129 0.75 0.571052
Target:  5'- gGCGCguucacaagCGUCAaaucguCGUCGACGGUcaauugaaagaaUCGCCg -3'
miRNA:   3'- gUGCGa--------GCAGU------GCAGCUGCCA------------AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 31352 0.74 0.600985
Target:  5'- cCGCGCUCugcgugGUCGcCG-CGGCGGUgugCGCCa -3'
miRNA:   3'- -GUGCGAG------CAGU-GCaGCUGCCAa--GCGG- -5'
7686 3' -55.1 NC_001973.1 + 106674 0.73 0.661254
Target:  5'- aCGCGCUCGacgaucucgacgUCGCuUUGGCGGgcgCGCCg -3'
miRNA:   3'- -GUGCGAGC------------AGUGcAGCUGCCaa-GCGG- -5'
7686 3' -55.1 NC_001973.1 + 120168 0.72 0.700093
Target:  5'- gCACGCU-GUCgguggcuucgACGUCGACGGUgaugguuUUGCCc -3'
miRNA:   3'- -GUGCGAgCAG----------UGCAGCUGCCA-------AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 61146 0.72 0.709937
Target:  5'- --aGCUCGUaccggcgccgcucCGCGUCgGGCGG-UCGCCg -3'
miRNA:   3'- gugCGAGCA-------------GUGCAG-CUGCCaAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 45634 0.72 0.709937
Target:  5'- aCGCGCUCGUCgagcgcgGCGUCGuacGCGGccugCGCg -3'
miRNA:   3'- -GUGCGAGCAG-------UGCAGC---UGCCaa--GCGg -5'
7686 3' -55.1 NC_001973.1 + 3501 0.72 0.710918
Target:  5'- gGCGCUUGgcCACGUCGACGacgaagccCGCCg -3'
miRNA:   3'- gUGCGAGCa-GUGCAGCUGCcaa-----GCGG- -5'
7686 3' -55.1 NC_001973.1 + 88454 0.72 0.714835
Target:  5'- gCACGaCUUGaaacaaaaacaaaaCACGUCGACGGUgcCGCCg -3'
miRNA:   3'- -GUGC-GAGCa-------------GUGCAGCUGCCAa-GCGG- -5'
7686 3' -55.1 NC_001973.1 + 104231 0.72 0.720691
Target:  5'- uCGCGCUCGgcgcgcugCGCGuccgucagcuguUCGGCGGcggCGCCg -3'
miRNA:   3'- -GUGCGAGCa-------GUGC------------AGCUGCCaa-GCGG- -5'
7686 3' -55.1 NC_001973.1 + 100944 0.72 0.73039
Target:  5'- gCGCGCUCGgccaccguuucCACGUCGcuCGGccucgUCGCCu -3'
miRNA:   3'- -GUGCGAGCa----------GUGCAGCu-GCCa----AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 36867 0.72 0.73039
Target:  5'- gCGCGCUCuGUU-CGaCGACGGgcgCGCCg -3'
miRNA:   3'- -GUGCGAG-CAGuGCaGCUGCCaa-GCGG- -5'
7686 3' -55.1 NC_001973.1 + 9123 0.72 0.73905
Target:  5'- uGCGCUCGcaCACGgcgaugaUCGACGaGgcgUCGCCg -3'
miRNA:   3'- gUGCGAGCa-GUGC-------AGCUGC-Ca--AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 96618 0.72 0.740008
Target:  5'- gCACgGCUaccUGUCGCGgcCGGCGGcgCGCCa -3'
miRNA:   3'- -GUG-CGA---GCAGUGCa-GCUGCCaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 46296 0.72 0.740008
Target:  5'- gCACGgUCGUgGCGcUCGGCGcGaucgUCGCCu -3'
miRNA:   3'- -GUGCgAGCAgUGC-AGCUGC-Ca---AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 2878 0.71 0.749535
Target:  5'- uCACGCUCGgcggacgCGCGUCGucGCGcuuugcUCGCCg -3'
miRNA:   3'- -GUGCGAGCa------GUGCAGC--UGCca----AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 72656 0.71 0.758962
Target:  5'- cCGCGCgCGUgCACGU-GACGGUUguauuucaCGCCg -3'
miRNA:   3'- -GUGCGaGCA-GUGCAgCUGCCAA--------GCGG- -5'
7686 3' -55.1 NC_001973.1 + 110348 0.71 0.758962
Target:  5'- aCGCGUUCGcCGCcUCGGCGGccgCGUCg -3'
miRNA:   3'- -GUGCGAGCaGUGcAGCUGCCaa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.