miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7686 3' -55.1 NC_001973.1 + 6416 0.66 0.944758
Target:  5'- uGCGCggCGgcggCGCGcCGACGaGcgCGCCc -3'
miRNA:   3'- gUGCGa-GCa---GUGCaGCUGC-CaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 31408 0.66 0.944758
Target:  5'- -gUGCUCGUCGuCGUgGugGGcaCGaCCa -3'
miRNA:   3'- guGCGAGCAGU-GCAgCugCCaaGC-GG- -5'
7686 3' -55.1 NC_001973.1 + 52744 0.66 0.944758
Target:  5'- gCGCGuCUCGUCGuCGUCGcccuugaguAUGGc-CGCCa -3'
miRNA:   3'- -GUGC-GAGCAGU-GCAGC---------UGCCaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 139978 0.66 0.944758
Target:  5'- aGCGCUUGcgcgcgCugGUCGAgcUGuUUCGCCa -3'
miRNA:   3'- gUGCGAGCa-----GugCAGCU--GCcAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 40730 0.66 0.944758
Target:  5'- cCACGCgc-UCGCGgaGAUGGgUCGCCg -3'
miRNA:   3'- -GUGCGagcAGUGCagCUGCCaAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 121304 0.66 0.944758
Target:  5'- -cCGCggCG-CGCGcCGGCGGacgCGCCg -3'
miRNA:   3'- guGCGa-GCaGUGCaGCUGCCaa-GCGG- -5'
7686 3' -55.1 NC_001973.1 + 132649 0.66 0.944758
Target:  5'- --aGCUCGUCGaaguccUCGAuCGGcUCGCCc -3'
miRNA:   3'- gugCGAGCAGUgc----AGCU-GCCaAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 6831 0.66 0.944319
Target:  5'- gACGCguacgCGUCGCGagugcgcUCGACGGaggggcugaGCCg -3'
miRNA:   3'- gUGCGa----GCAGUGC-------AGCUGCCaag------CGG- -5'
7686 3' -55.1 NC_001973.1 + 145427 0.67 0.940271
Target:  5'- cCGCgGCUCGUUugGauauCGGgcgUCGCCa -3'
miRNA:   3'- -GUG-CGAGCAGugCagcuGCCa--AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 95322 0.67 0.940271
Target:  5'- gCGCGUUCGUCGaGUCGGCG---CGCg -3'
miRNA:   3'- -GUGCGAGCAGUgCAGCUGCcaaGCGg -5'
7686 3' -55.1 NC_001973.1 + 36158 0.67 0.93981
Target:  5'- gCGCGCUgGUCGCGUucuugcaCGACcag-CGCCc -3'
miRNA:   3'- -GUGCGAgCAGUGCA-------GCUGccaaGCGG- -5'
7686 3' -55.1 NC_001973.1 + 1915 0.67 0.938881
Target:  5'- uCugGCcgaUCGUCugGUUGGCGucgugcaaauuuuuGUUgGCCa -3'
miRNA:   3'- -GugCG---AGCAGugCAGCUGC--------------CAAgCGG- -5'
7686 3' -55.1 NC_001973.1 + 80451 0.67 0.935556
Target:  5'- -uCGCg-GUCugG-CGGCGGUccggCGCCa -3'
miRNA:   3'- guGCGagCAGugCaGCUGCCAa---GCGG- -5'
7686 3' -55.1 NC_001973.1 + 107259 0.67 0.93061
Target:  5'- gCGCGCggcgCGUCGC-UUGACcucGUUCGUCa -3'
miRNA:   3'- -GUGCGa---GCAGUGcAGCUGc--CAAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 97002 0.67 0.93061
Target:  5'- aGCGcCUCGUCGCG-CGcCG--UCGCCc -3'
miRNA:   3'- gUGC-GAGCAGUGCaGCuGCcaAGCGG- -5'
7686 3' -55.1 NC_001973.1 + 41461 0.67 0.925434
Target:  5'- -cCGCagUCGUgucguugucCGCGUCGACGGcgaucgucaUCGCCg -3'
miRNA:   3'- guGCG--AGCA---------GUGCAGCUGCCa--------AGCGG- -5'
7686 3' -55.1 NC_001973.1 + 124288 0.67 0.924371
Target:  5'- gACGCUCugaugcaauggUACGUCGGCGGcacgCGCUc -3'
miRNA:   3'- gUGCGAGca---------GUGCAGCUGCCaa--GCGG- -5'
7686 3' -55.1 NC_001973.1 + 81781 0.67 0.920027
Target:  5'- uCGCGCUCGgcgcgaaagugCACGgCcGCGGUguccggCGCCg -3'
miRNA:   3'- -GUGCGAGCa----------GUGCaGcUGCCAa-----GCGG- -5'
7686 3' -55.1 NC_001973.1 + 77007 0.67 0.920027
Target:  5'- uCAC-CUCGUCggGCGgCGGCGGcgCGCg -3'
miRNA:   3'- -GUGcGAGCAG--UGCaGCUGCCaaGCGg -5'
7686 3' -55.1 NC_001973.1 + 65582 0.67 0.920027
Target:  5'- --aGCUCGUCugGUCGcucauauacACGucgCGCCu -3'
miRNA:   3'- gugCGAGCAGugCAGC---------UGCcaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.