miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7686 5' -46.9 NC_001973.1 + 42914 0.66 0.999973
Target:  5'- cCGGACGACGcucgcgacUGcAUCGugGCGGAGgagaaGCGCg -3'
miRNA:   3'- -GCUUGCUGU--------AU-UAGC--UGCCUCa----UGUG- -5'
7686 5' -46.9 NC_001973.1 + 66222 0.66 0.999973
Target:  5'- uCGAGCaACAacgAAUUGAUGGAGaACAUc -3'
miRNA:   3'- -GCUUGcUGUa--UUAGCUGCCUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 51473 0.66 0.999973
Target:  5'- uCGAGCGGCcgGGUCGAUGcgcucggauGAGUAa-- -3'
miRNA:   3'- -GCUUGCUGuaUUAGCUGC---------CUCAUgug -5'
7686 5' -46.9 NC_001973.1 + 32364 0.66 0.999973
Target:  5'- aUGAGCGuguGCAUGcacgugccgaaAUCGACGGGGcUGCu- -3'
miRNA:   3'- -GCUUGC---UGUAU-----------UAGCUGCCUC-AUGug -5'
7686 5' -46.9 NC_001973.1 + 44077 0.66 0.999935
Target:  5'- aGAGCGcACGUAcguGUCGAUGaGGGUcgaAUACa -3'
miRNA:   3'- gCUUGC-UGUAU---UAGCUGC-CUCA---UGUG- -5'
7686 5' -46.9 NC_001973.1 + 96769 0.66 0.999914
Target:  5'- uCGGGCGGCGUGG-CGgccaacGCGGcccAGUACAUg -3'
miRNA:   3'- -GCUUGCUGUAUUaGC------UGCC---UCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 83148 0.66 0.999914
Target:  5'- aCGAcuACGACAcccUGA-CG-CGcGAGUACACg -3'
miRNA:   3'- -GCU--UGCUGU---AUUaGCuGC-CUCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 144729 0.67 0.99989
Target:  5'- uCGAGCGcCAggcggCGGCGGAGgcggccgaggaggcgGCGCg -3'
miRNA:   3'- -GCUUGCuGUauua-GCUGCCUCa--------------UGUG- -5'
7686 5' -46.9 NC_001973.1 + 135606 0.67 0.999887
Target:  5'- aCGAcGCGGCGaugcUGAU-GAUGGAGUugGCc -3'
miRNA:   3'- -GCU-UGCUGU----AUUAgCUGCCUCAugUG- -5'
7686 5' -46.9 NC_001973.1 + 28093 0.67 0.999853
Target:  5'- aGGACGuCAUug-CGGCGGAGcgACGa -3'
miRNA:   3'- gCUUGCuGUAuuaGCUGCCUCa-UGUg -5'
7686 5' -46.9 NC_001973.1 + 81833 0.67 0.999811
Target:  5'- aCGAGaCGACGagcucaGGUCGACGGGGUcgucGgGCg -3'
miRNA:   3'- -GCUU-GCUGUa-----UUAGCUGCCUCA----UgUG- -5'
7686 5' -46.9 NC_001973.1 + 140852 0.67 0.999811
Target:  5'- aCGAcGCGuACGUGGauUgGACGGGcGUGCGCa -3'
miRNA:   3'- -GCU-UGC-UGUAUU--AgCUGCCU-CAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 143117 0.67 0.999758
Target:  5'- gCGGACGAgCAgu-UCGACuuGGAG-GCACa -3'
miRNA:   3'- -GCUUGCU-GUauuAGCUG--CCUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 62606 0.67 0.999758
Target:  5'- uCGAGCGACgcgucGUGGUCGACGc---GCGCg -3'
miRNA:   3'- -GCUUGCUG-----UAUUAGCUGCcucaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 152380 0.67 0.999752
Target:  5'- cCGGACGGCcgGcgCGggcgggcGCGGGGcgGCGCg -3'
miRNA:   3'- -GCUUGCUGuaUuaGC-------UGCCUCa-UGUG- -5'
7686 5' -46.9 NC_001973.1 + 30395 0.68 0.999693
Target:  5'- cCGGcGCGGCGgcggCGGCGGAG-GCGCc -3'
miRNA:   3'- -GCU-UGCUGUauuaGCUGCCUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 120053 0.68 0.999693
Target:  5'- uGGAUGuuGUAGUCGuuGaGGGUGCGCu -3'
miRNA:   3'- gCUUGCugUAUUAGCugC-CUCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 87579 0.68 0.999612
Target:  5'- aCGAACGG-GUAGUCGAgcuCGGucUGCACg -3'
miRNA:   3'- -GCUUGCUgUAUUAGCU---GCCucAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 111246 0.68 0.999612
Target:  5'- aCGGGCGAgGgGGUCGACGcGG-ACGCg -3'
miRNA:   3'- -GCUUGCUgUaUUAGCUGCcUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 132436 0.68 0.999612
Target:  5'- gCGAGCGugGUGGaggcgcCGGCGGGGcGCGg -3'
miRNA:   3'- -GCUUGCugUAUUa-----GCUGCCUCaUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.