miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7686 5' -46.9 NC_001973.1 + 121811 1.13 0.016865
Target:  5'- cCGAACGACAUAAUCGACGGAGUACACg -3'
miRNA:   3'- -GCUUGCUGUAUUAGCUGCCUCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 14358 0.78 0.863262
Target:  5'- uGGuCGGCGUGGUCGACGGGGcGCGg -3'
miRNA:   3'- gCUuGCUGUAUUAGCUGCCUCaUGUg -5'
7686 5' -46.9 NC_001973.1 + 95870 0.78 0.863262
Target:  5'- aGGACGGCGUGGUCGACuaccgcGAGcUGCGCg -3'
miRNA:   3'- gCUUGCUGUAUUAGCUGc-----CUC-AUGUG- -5'
7686 5' -46.9 NC_001973.1 + 22069 0.76 0.906603
Target:  5'- uGGGCGGCGUGu---GCGGAGUGCGCc -3'
miRNA:   3'- gCUUGCUGUAUuagcUGCCUCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 8160 0.76 0.906603
Target:  5'- gCGAACGGCAccgucggcgGGUCGACGGAcGaGCGCg -3'
miRNA:   3'- -GCUUGCUGUa--------UUAGCUGCCU-CaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 118596 0.75 0.95422
Target:  5'- uGGGCGACGUGAagGGCGu-GUGCGCg -3'
miRNA:   3'- gCUUGCUGUAUUagCUGCcuCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 71385 0.73 0.977262
Target:  5'- cCGAGCaGAuCAUGAUCGACgaGGAG-ACGCu -3'
miRNA:   3'- -GCUUG-CU-GUAUUAGCUG--CCUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 143168 0.73 0.981891
Target:  5'- cCGGGCGGCugcgugGAUCGGa-GAGUGCGCg -3'
miRNA:   3'- -GCUUGCUGua----UUAGCUgcCUCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 52180 0.72 0.985775
Target:  5'- -uGGCGACGaGcgCGGCGGGGUcGCGCg -3'
miRNA:   3'- gcUUGCUGUaUuaGCUGCCUCA-UGUG- -5'
7686 5' -46.9 NC_001973.1 + 38972 0.71 0.991603
Target:  5'- gCGAGCGuuUAUAAacCGACGGcGGUGCGCa -3'
miRNA:   3'- -GCUUGCu-GUAUUa-GCUGCC-UCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 15112 0.71 0.991603
Target:  5'- gGAACGACAacAUCGAgGGGGaGgACg -3'
miRNA:   3'- gCUUGCUGUauUAGCUgCCUCaUgUG- -5'
7686 5' -46.9 NC_001973.1 + 123867 0.71 0.99458
Target:  5'- aCGAgcACGGCAgggaCGACGGcacgcuGGUGCACg -3'
miRNA:   3'- -GCU--UGCUGUauuaGCUGCC------UCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 112936 0.71 0.995357
Target:  5'- gCGGACGGCGUucuccGUC-ACGGAGacgACGCg -3'
miRNA:   3'- -GCUUGCUGUAu----UAGcUGCCUCa--UGUG- -5'
7686 5' -46.9 NC_001973.1 + 107518 0.7 0.99664
Target:  5'- uCGAACGGCGcgcgagacaaUGAUCGugGGGcuucggGCGCg -3'
miRNA:   3'- -GCUUGCUGU----------AUUAGCugCCUca----UGUG- -5'
7686 5' -46.9 NC_001973.1 + 81032 0.7 0.997615
Target:  5'- cCGAcgGCGGUAUGcgggccgcGUCGACGGGcGUGCGCu -3'
miRNA:   3'- -GCU--UGCUGUAU--------UAGCUGCCU-CAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 134963 0.7 0.997615
Target:  5'- gCGAACG-CcgGGUCGGCGaucGAGUACGu -3'
miRNA:   3'- -GCUUGCuGuaUUAGCUGC---CUCAUGUg -5'
7686 5' -46.9 NC_001973.1 + 32841 0.69 0.997969
Target:  5'- cCGGAUGACGcugcucuugguuuUGuuucGUCGACGGGGcACGCu -3'
miRNA:   3'- -GCUUGCUGU-------------AU----UAGCUGCCUCaUGUG- -5'
7686 5' -46.9 NC_001973.1 + 136485 0.69 0.998006
Target:  5'- -cGGCGGCGUGGcCGACGcuguGGUACACg -3'
miRNA:   3'- gcUUGCUGUAUUaGCUGCc---UCAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 135310 0.69 0.998628
Target:  5'- aCGGugGGCAcccucGUCGAgCGGAuaGUACACc -3'
miRNA:   3'- -GCUugCUGUau---UAGCU-GCCU--CAUGUG- -5'
7686 5' -46.9 NC_001973.1 + 67393 0.69 0.998872
Target:  5'- uGAACGuuGggccCGGCGGuGUACACg -3'
miRNA:   3'- gCUUGCugUauuaGCUGCCuCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.