miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7687 3' -53.1 NC_001973.1 + 134977 0.66 0.983027
Target:  5'- -gGCGaUCGAguacgUCcgGGCCGUC-GGGCGg -3'
miRNA:   3'- cgCGC-AGCU-----AGaaCCGGCAGuUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 80830 0.66 0.982438
Target:  5'- -gGCGUUGAcuUCUUGuccagguacacguuGCCGUCGcuGGCGa -3'
miRNA:   3'- cgCGCAGCU--AGAAC--------------CGGCAGUu-UCGC- -5'
7687 3' -53.1 NC_001973.1 + 126667 0.66 0.981002
Target:  5'- cGCGCGgccUCGcaAUCUUGucuaGCCGUUucGGCGu -3'
miRNA:   3'- -CGCGC---AGC--UAGAAC----CGGCAGuuUCGC- -5'
7687 3' -53.1 NC_001973.1 + 20117 0.66 0.981002
Target:  5'- cGCGgGUcCGAgggCUUGGUgauuaCGUCuuGAGCGa -3'
miRNA:   3'- -CGCgCA-GCUa--GAACCG-----GCAGu-UUCGC- -5'
7687 3' -53.1 NC_001973.1 + 137008 0.66 0.981002
Target:  5'- aGCGCGU-GcgCcgGGUCGcCGAAGCGc -3'
miRNA:   3'- -CGCGCAgCuaGaaCCGGCaGUUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 52201 0.66 0.980361
Target:  5'- cGCGCGacucgagcagcgacUCGAUCUgcucGuuGUCAAAGUc -3'
miRNA:   3'- -CGCGC--------------AGCUAGAac--CggCAGUUUCGc -5'
7687 3' -53.1 NC_001973.1 + 117085 0.66 0.978802
Target:  5'- uGCGCGuucauuUCGGUCcaccgGGCCGUCAuaaacuccccaAAGUc -3'
miRNA:   3'- -CGCGC------AGCUAGaa---CCGGCAGU-----------UUCGc -5'
7687 3' -53.1 NC_001973.1 + 121186 0.66 0.978802
Target:  5'- aGCGCGaaccgcgCGAUCUcgaacucGCCcucgGUCAGAGCGa -3'
miRNA:   3'- -CGCGCa------GCUAGAac-----CGG----CAGUUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 42951 0.66 0.976418
Target:  5'- aGCGCGcUCG-UCccaGcGCCGUCGAcGCGa -3'
miRNA:   3'- -CGCGC-AGCuAGaa-C-CGGCAGUUuCGC- -5'
7687 3' -53.1 NC_001973.1 + 23007 0.66 0.973844
Target:  5'- cGUGCaaaaGAUCUUGGCCGaCGuGGUGu -3'
miRNA:   3'- -CGCGcag-CUAGAACCGGCaGUuUCGC- -5'
7687 3' -53.1 NC_001973.1 + 143526 0.67 0.971071
Target:  5'- aCGCGccCGAUgcUGGCCGgcUCGAAGCc -3'
miRNA:   3'- cGCGCa-GCUAgaACCGGC--AGUUUCGc -5'
7687 3' -53.1 NC_001973.1 + 121271 0.67 0.971071
Target:  5'- cGCGCGgccaaucgCGAaauUCgcGGCCGUCGcccGCGg -3'
miRNA:   3'- -CGCGCa-------GCU---AGaaCCGGCAGUuu-CGC- -5'
7687 3' -53.1 NC_001973.1 + 16183 0.67 0.968094
Target:  5'- cCGUGUCGG-CgcaGGCCGcUAGAGCGc -3'
miRNA:   3'- cGCGCAGCUaGaa-CCGGCaGUUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 67578 0.67 0.968094
Target:  5'- uUGC-UUGAUCUcaaaguUGGCCGUCGuucgguuGGCGg -3'
miRNA:   3'- cGCGcAGCUAGA------ACCGGCAGUu------UCGC- -5'
7687 3' -53.1 NC_001973.1 + 101623 0.67 0.964905
Target:  5'- uGgGCGgcaCGAUCUcguugGcGCCGUUGAAGCa -3'
miRNA:   3'- -CgCGCa--GCUAGAa----C-CGGCAGUUUCGc -5'
7687 3' -53.1 NC_001973.1 + 36887 0.67 0.964905
Target:  5'- gGCGCGcCGAguucaccgccgcUCaa-GUCGUCGAAGCGg -3'
miRNA:   3'- -CGCGCaGCU------------AGaacCGGCAGUUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 151378 0.67 0.964905
Target:  5'- aCGCGUCGGcCggGGUCGUCuGAGGUu -3'
miRNA:   3'- cGCGCAGCUaGaaCCGGCAG-UUUCGc -5'
7687 3' -53.1 NC_001973.1 + 25646 0.67 0.961499
Target:  5'- cGCGCGUCGAcgCggagccgaaGCCGUCGccgAAGCc -3'
miRNA:   3'- -CGCGCAGCUa-Gaac------CGGCAGU---UUCGc -5'
7687 3' -53.1 NC_001973.1 + 90304 0.67 0.95787
Target:  5'- gGCGCacaGUCGGUC--GGCgGgCGAGGCGg -3'
miRNA:   3'- -CGCG---CAGCUAGaaCCGgCaGUUUCGC- -5'
7687 3' -53.1 NC_001973.1 + 42030 0.67 0.95787
Target:  5'- -aGCGUCGA-CcUGGCCGagguGAGCGc -3'
miRNA:   3'- cgCGCAGCUaGaACCGGCagu-UUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.