miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7687 5' -58.8 NC_001973.1 + 86168 0.66 0.811444
Target:  5'- -aCGCGUggguggaccugcUGGCGGCCGAGa--UGCAg -3'
miRNA:   3'- ccGCGCA------------ACCGCCGGUUCaggACGUg -5'
7687 5' -58.8 NC_001973.1 + 31098 0.66 0.811444
Target:  5'- gGGCGCGUUGGUGauguugugguGCUucgcGGUCgUGC-Cg -3'
miRNA:   3'- -CCGCGCAACCGC----------CGGu---UCAGgACGuG- -5'
7687 5' -58.8 NC_001973.1 + 1867 0.66 0.811444
Target:  5'- aGgGC-UUGGCGaUCAcGUCCUGCGCu -3'
miRNA:   3'- cCgCGcAACCGCcGGUuCAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 76584 0.66 0.802762
Target:  5'- aGCGUGgccgaGGCGGCCAAGcaguugggCCUgGCGg -3'
miRNA:   3'- cCGCGCaa---CCGCCGGUUCa-------GGA-CGUg -5'
7687 5' -58.8 NC_001973.1 + 52851 0.66 0.79393
Target:  5'- cGGcCGCGc--GCGGCCGgucGGUCCagcugGCGCc -3'
miRNA:   3'- -CC-GCGCaacCGCCGGU---UCAGGa----CGUG- -5'
7687 5' -58.8 NC_001973.1 + 95677 0.66 0.79393
Target:  5'- cGCGcCGUcgUGGCGGCCcgacGAGcCCUaCACc -3'
miRNA:   3'- cCGC-GCA--ACCGCCGG----UUCaGGAcGUG- -5'
7687 5' -58.8 NC_001973.1 + 144246 0.66 0.784957
Target:  5'- uGCGCGcUGGCGGaCGAGg---GCGCg -3'
miRNA:   3'- cCGCGCaACCGCCgGUUCaggaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 58047 0.66 0.784957
Target:  5'- cGGCgGCGgcGGCGGC----UCUUGCAUa -3'
miRNA:   3'- -CCG-CGCaaCCGCCGguucAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 81886 0.66 0.775852
Target:  5'- uGCGCGUgu-CGGCCGcGUCCcgacGCACc -3'
miRNA:   3'- cCGCGCAaccGCCGGUuCAGGa---CGUG- -5'
7687 5' -58.8 NC_001973.1 + 68837 0.66 0.775852
Target:  5'- -aCGCGaUGaCGGCCAA--CCUGCACg -3'
miRNA:   3'- ccGCGCaACcGCCGGUUcaGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 120945 0.67 0.756336
Target:  5'- aGCGCGgucugcacGGCGGCCAgcgcggcGGU-UUGCGCg -3'
miRNA:   3'- cCGCGCaa------CCGCCGGU-------UCAgGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 132543 0.67 0.738273
Target:  5'- gGGCGCGgcGGCGGgC---UCgaGCGCg -3'
miRNA:   3'- -CCGCGCaaCCGCCgGuucAGgaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 28419 0.67 0.738273
Target:  5'- aGCGCGcUUGGCGGCCGcGgCCgccGC-Cg -3'
miRNA:   3'- cCGCGC-AACCGCCGGUuCaGGa--CGuG- -5'
7687 5' -58.8 NC_001973.1 + 45422 0.67 0.728633
Target:  5'- cGGCGCccacguaaaaGUauugGGCGGUCGGGUUgUcGCACa -3'
miRNA:   3'- -CCGCG----------CAa---CCGCCGGUUCAGgA-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 146381 0.67 0.728633
Target:  5'- aGCGUGUgcccGGCGGgCAGGUCgCUGaugucCACg -3'
miRNA:   3'- cCGCGCAa---CCGCCgGUUCAG-GAC-----GUG- -5'
7687 5' -58.8 NC_001973.1 + 29342 0.67 0.728633
Target:  5'- aGGCGCGgacaUGGCGGCUAAauauuauagucGUUUUGUg- -3'
miRNA:   3'- -CCGCGCa---ACCGCCGGUU-----------CAGGACGug -5'
7687 5' -58.8 NC_001973.1 + 45952 0.67 0.727664
Target:  5'- cGGCGCGcucuugacGGCGGCCGGcgcgcucGcCCUGCu- -3'
miRNA:   3'- -CCGCGCaa------CCGCCGGUU-------CaGGACGug -5'
7687 5' -58.8 NC_001973.1 + 81788 0.68 0.70912
Target:  5'- cGGCGCGaaagUGcaCGGCCGcgguGUCCgGCGCc -3'
miRNA:   3'- -CCGCGCa---ACc-GCCGGUu---CAGGaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 25938 0.68 0.689355
Target:  5'- gGGCGgGcucGCGGCCGAGUCCUc--- -3'
miRNA:   3'- -CCGCgCaacCGCCGGUUCAGGAcgug -5'
7687 5' -58.8 NC_001973.1 + 22073 0.68 0.679399
Target:  5'- cGGCGUGUgcgGaGUGcGCCGAGUUUUGUAa -3'
miRNA:   3'- -CCGCGCAa--C-CGC-CGGUUCAGGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.