miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7687 5' -58.8 NC_001973.1 + 121013 1.1 0.001359
Target:  5'- gGGCGCGUUGGCGGCCAAGUCCUGCACc -3'
miRNA:   3'- -CCGCGCAACCGCCGGUUCAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 118477 0.8 0.146393
Target:  5'- cGGCGCGUcccaacuacgUGGCGgcgacucGCCAGGcCCUGCGCg -3'
miRNA:   3'- -CCGCGCA----------ACCGC-------CGGUUCaGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 34202 0.8 0.16228
Target:  5'- aGCGCGUUGGacgucuuGGCCAGGUCgUGCAg -3'
miRNA:   3'- cCGCGCAACCg------CCGGUUCAGgACGUg -5'
7687 5' -58.8 NC_001973.1 + 59119 0.75 0.30274
Target:  5'- aGCGCGUUcGUGGCCAAGUUg-GCGCg -3'
miRNA:   3'- cCGCGCAAcCGCCGGUUCAGgaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 28285 0.75 0.316736
Target:  5'- cGCGCcucgUGGCGGCCGAGcgCCgcgucgGCGCa -3'
miRNA:   3'- cCGCGca--ACCGCCGGUUCa-GGa-----CGUG- -5'
7687 5' -58.8 NC_001973.1 + 5947 0.75 0.331214
Target:  5'- uGCGCGac-GCGGCCGGcggaugcgacGUCCUGCACu -3'
miRNA:   3'- cCGCGCaacCGCCGGUU----------CAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 144741 0.74 0.346173
Target:  5'- cGGCgGCGgaGGCGGCCGAGgaggcgGCGCg -3'
miRNA:   3'- -CCG-CGCaaCCGCCGGUUCagga--CGUG- -5'
7687 5' -58.8 NC_001973.1 + 128424 0.73 0.397225
Target:  5'- cGGCGCcucccugccuugGUUGGUGGCCGcGUgcacggcguucaugcCCUGCGCu -3'
miRNA:   3'- -CCGCG------------CAACCGCCGGUuCA---------------GGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 27857 0.72 0.427989
Target:  5'- cGGCGC--UGGCGGCCGcGgCCgcggGCGCg -3'
miRNA:   3'- -CCGCGcaACCGCCGGUuCaGGa---CGUG- -5'
7687 5' -58.8 NC_001973.1 + 135932 0.72 0.463767
Target:  5'- gGGCGCGgcgaUGGCGcGCCAAGUgCgccaagugGCAa -3'
miRNA:   3'- -CCGCGCa---ACCGC-CGGUUCAgGa-------CGUg -5'
7687 5' -58.8 NC_001973.1 + 45613 0.71 0.482232
Target:  5'- aGCGCGUcGGCGaUCAGGUCCacGCGCu -3'
miRNA:   3'- cCGCGCAaCCGCcGGUUCAGGa-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 30396 0.71 0.485968
Target:  5'- cGGCGCGgcggcGGCGGCgGAGgcgCCgcgaacugccgacgGCACa -3'
miRNA:   3'- -CCGCGCaa---CCGCCGgUUCa--GGa-------------CGUG- -5'
7687 5' -58.8 NC_001973.1 + 21545 0.71 0.510575
Target:  5'- cGGCGUcg-GGCGcGCCGuGGUCCcgGCGCg -3'
miRNA:   3'- -CCGCGcaaCCGC-CGGU-UCAGGa-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 96771 0.71 0.510575
Target:  5'- gGGCgGCG-UGGCGGCCAacgcGGcCCaGUACa -3'
miRNA:   3'- -CCG-CGCaACCGCCGGU----UCaGGaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 138132 0.71 0.52985
Target:  5'- -cCGCGccGGUGGCCAGcGUUCUGUGCa -3'
miRNA:   3'- ccGCGCaaCCGCCGGUU-CAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 7929 0.7 0.539587
Target:  5'- aGCGCGUgUGcGCGGCCGGcGUggUGCACg -3'
miRNA:   3'- cCGCGCA-AC-CGCCGGUU-CAggACGUG- -5'
7687 5' -58.8 NC_001973.1 + 124338 0.7 0.559237
Target:  5'- cGC-CGacgUGGCGGCC--GUCCUGCAg -3'
miRNA:   3'- cCGcGCa--ACCGCCGGuuCAGGACGUg -5'
7687 5' -58.8 NC_001973.1 + 120577 0.7 0.569138
Target:  5'- gGGCGUGcuaucacgGGCGcGCCGAGUCgCggUGCGCc -3'
miRNA:   3'- -CCGCGCaa------CCGC-CGGUUCAG-G--ACGUG- -5'
7687 5' -58.8 NC_001973.1 + 11514 0.7 0.569138
Target:  5'- aGGCGCcucucggcccucGUUGGUGGCCA---CgUGCACa -3'
miRNA:   3'- -CCGCG------------CAACCGCCGGUucaGgACGUG- -5'
7687 5' -58.8 NC_001973.1 + 101206 0.69 0.619158
Target:  5'- uGGCGCGcgGGCGGCgCuucuGGUCgCgccacaGCGCg -3'
miRNA:   3'- -CCGCGCaaCCGCCG-Gu---UCAG-Ga-----CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.