miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7687 5' -58.8 NC_001973.1 + 1867 0.66 0.811444
Target:  5'- aGgGC-UUGGCGaUCAcGUCCUGCGCu -3'
miRNA:   3'- cCgCGcAACCGCcGGUuCAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 5947 0.75 0.331214
Target:  5'- uGCGCGac-GCGGCCGGcggaugcgacGUCCUGCACu -3'
miRNA:   3'- cCGCGCaacCGCCGGUU----------CAGGACGUG- -5'
7687 5' -58.8 NC_001973.1 + 6352 0.68 0.669405
Target:  5'- cGGCGUcgaGGgGGCCGAGcCUUGCGa -3'
miRNA:   3'- -CCGCGcaaCCgCCGGUUCaGGACGUg -5'
7687 5' -58.8 NC_001973.1 + 7273 0.68 0.658379
Target:  5'- cGGCGCGc-GGCGcGCCcgcuaccGGGUCaaGCACa -3'
miRNA:   3'- -CCGCGCaaCCGC-CGG-------UUCAGgaCGUG- -5'
7687 5' -58.8 NC_001973.1 + 7929 0.7 0.539587
Target:  5'- aGCGCGUgUGcGCGGCCGGcGUggUGCACg -3'
miRNA:   3'- cCGCGCA-AC-CGCCGGUU-CAggACGUG- -5'
7687 5' -58.8 NC_001973.1 + 11514 0.7 0.569138
Target:  5'- aGGCGCcucucggcccucGUUGGUGGCCA---CgUGCACa -3'
miRNA:   3'- -CCGCG------------CAACCGCCGGUucaGgACGUG- -5'
7687 5' -58.8 NC_001973.1 + 21545 0.71 0.510575
Target:  5'- cGGCGUcg-GGCGcGCCGuGGUCCcgGCGCg -3'
miRNA:   3'- -CCGCGcaaCCGC-CGGU-UCAGGa-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 22073 0.68 0.679399
Target:  5'- cGGCGUGUgcgGaGUGcGCCGAGUUUUGUAa -3'
miRNA:   3'- -CCGCGCAa--C-CGC-CGGUUCAGGACGUg -5'
7687 5' -58.8 NC_001973.1 + 25938 0.68 0.689355
Target:  5'- gGGCGgGcucGCGGCCGAGUCCUc--- -3'
miRNA:   3'- -CCGCgCaacCGCCGGUUCAGGAcgug -5'
7687 5' -58.8 NC_001973.1 + 27857 0.72 0.427989
Target:  5'- cGGCGC--UGGCGGCCGcGgCCgcggGCGCg -3'
miRNA:   3'- -CCGCGcaACCGCCGGUuCaGGa---CGUG- -5'
7687 5' -58.8 NC_001973.1 + 28285 0.75 0.316736
Target:  5'- cGCGCcucgUGGCGGCCGAGcgCCgcgucgGCGCa -3'
miRNA:   3'- cCGCGca--ACCGCCGGUUCa-GGa-----CGUG- -5'
7687 5' -58.8 NC_001973.1 + 28419 0.67 0.738273
Target:  5'- aGCGCGcUUGGCGGCCGcGgCCgccGC-Cg -3'
miRNA:   3'- cCGCGC-AACCGCCGGUuCaGGa--CGuG- -5'
7687 5' -58.8 NC_001973.1 + 29342 0.67 0.728633
Target:  5'- aGGCGCGgacaUGGCGGCUAAauauuauagucGUUUUGUg- -3'
miRNA:   3'- -CCGCGCa---ACCGCCGGUU-----------CAGGACGug -5'
7687 5' -58.8 NC_001973.1 + 30396 0.71 0.485968
Target:  5'- cGGCGCGgcggcGGCGGCgGAGgcgCCgcgaacugccgacgGCACa -3'
miRNA:   3'- -CCGCGCaa---CCGCCGgUUCa--GGa-------------CGUG- -5'
7687 5' -58.8 NC_001973.1 + 31098 0.66 0.811444
Target:  5'- gGGCGCGUUGGUGauguugugguGCUucgcGGUCgUGC-Cg -3'
miRNA:   3'- -CCGCGCAACCGC----------CGGu---UCAGgACGuG- -5'
7687 5' -58.8 NC_001973.1 + 34202 0.8 0.16228
Target:  5'- aGCGCGUUGGacgucuuGGCCAGGUCgUGCAg -3'
miRNA:   3'- cCGCGCAACCg------CCGGUUCAGgACGUg -5'
7687 5' -58.8 NC_001973.1 + 35689 0.68 0.678401
Target:  5'- cGGCGCGgUGGCGGCgaugcgcgaCGAGgcgcgauUCgUGUACg -3'
miRNA:   3'- -CCGCGCaACCGCCG---------GUUC-------AGgACGUG- -5'
7687 5' -58.8 NC_001973.1 + 45422 0.67 0.728633
Target:  5'- cGGCGCccacguaaaaGUauugGGCGGUCGGGUUgUcGCACa -3'
miRNA:   3'- -CCGCG----------CAa---CCGCCGGUUCAGgA-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 45613 0.71 0.482232
Target:  5'- aGCGCGUcGGCGaUCAGGUCCacGCGCu -3'
miRNA:   3'- cCGCGCAaCCGCcGGUUCAGGa-CGUG- -5'
7687 5' -58.8 NC_001973.1 + 45952 0.67 0.727664
Target:  5'- cGGCGCGcucuugacGGCGGCCGGcgcgcucGcCCUGCu- -3'
miRNA:   3'- -CCGCGCaa------CCGCCGGUU-------CaGGACGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.