miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7690 3' -57.3 NC_001973.1 + 52733 0.65 0.889746
Target:  5'- aGCGCCagGCGGC-GCGuCUCgucgucgucgcccuUGAGUauGGCCg -3'
miRNA:   3'- -CGCGG--CGCUGuUGC-GAG--------------ACUCG--UCGG- -5'
7690 3' -57.3 NC_001973.1 + 133614 0.65 0.889746
Target:  5'- uCGCCGagcacgaagcCGAUcAgGCUCUcccaccauugcaugGAGCAGCCg -3'
miRNA:   3'- cGCGGC----------GCUGuUgCGAGA--------------CUCGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 98340 0.66 0.885028
Target:  5'- uGCaGCgGCGGCGGCGCgc-GuuCGGCCg -3'
miRNA:   3'- -CG-CGgCGCUGUUGCGagaCucGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 17209 0.66 0.885028
Target:  5'- uGCGCCcuGCuguacGCGAUGCUCgaGAgcacGCAGCCc -3'
miRNA:   3'- -CGCGG--CGc----UGUUGCGAGa-CU----CGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 77383 0.66 0.885028
Target:  5'- cGCGCCgGCGcCGACGUUUUGgugauGGC-GCUg -3'
miRNA:   3'- -CGCGG-CGCuGUUGCGAGAC-----UCGuCGG- -5'
7690 3' -57.3 NC_001973.1 + 82914 0.66 0.885028
Target:  5'- cGCGCC-CGAcCGACGCguucGGCGcGCCg -3'
miRNA:   3'- -CGCGGcGCU-GUUGCGagacUCGU-CGG- -5'
7690 3' -57.3 NC_001973.1 + 25722 0.66 0.885028
Target:  5'- cGCGCCGCccGCGcCGC-CgGcGCGGCCu -3'
miRNA:   3'- -CGCGGCGc-UGUuGCGaGaCuCGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 159092 0.66 0.884345
Target:  5'- cGCGCUGCGAaucaaacuGGCGUUgcucggcccgcgaCUGAGCgAGUCg -3'
miRNA:   3'- -CGCGGCGCUg-------UUGCGA-------------GACUCG-UCGG- -5'
7690 3' -57.3 NC_001973.1 + 42873 0.66 0.878103
Target:  5'- aGCGa-GCGGCGGCGCg-UGAucuGCAGCg -3'
miRNA:   3'- -CGCggCGCUGUUGCGagACU---CGUCGg -5'
7690 3' -57.3 NC_001973.1 + 27578 0.66 0.878103
Target:  5'- cGCGCaCGC-ACuucucgucGCGCUCguaGAGCAcgGCCg -3'
miRNA:   3'- -CGCG-GCGcUGu-------UGCGAGa--CUCGU--CGG- -5'
7690 3' -57.3 NC_001973.1 + 56175 0.66 0.878103
Target:  5'- uCGCUGuCGGCGGCGCgCUcGAcGUAGUCg -3'
miRNA:   3'- cGCGGC-GCUGUUGCGaGA-CU-CGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 69844 0.66 0.878103
Target:  5'- uGCaaCGCcACGGCGUUUUGAGCcugaacGGCCa -3'
miRNA:   3'- -CGcgGCGcUGUUGCGAGACUCG------UCGG- -5'
7690 3' -57.3 NC_001973.1 + 71727 0.66 0.878103
Target:  5'- cCGCCGCGccccCGGCGC-Cc--GCGGCCg -3'
miRNA:   3'- cGCGGCGCu---GUUGCGaGacuCGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 101593 0.66 0.877398
Target:  5'- cGCGCCcguaguaGCGcCgAAUGCUCgccuUGGGCGGCa -3'
miRNA:   3'- -CGCGG-------CGCuG-UUGCGAG----ACUCGUCGg -5'
7690 3' -57.3 NC_001973.1 + 30397 0.66 0.870965
Target:  5'- gGCGCgGCGGCGGCGgCg--GAGgC-GCCg -3'
miRNA:   3'- -CGCGgCGCUGUUGC-GagaCUC-GuCGG- -5'
7690 3' -57.3 NC_001973.1 + 35981 0.66 0.870965
Target:  5'- uCGCCGCGG--ACGaggUGAGCGGCa -3'
miRNA:   3'- cGCGGCGCUguUGCgagACUCGUCGg -5'
7690 3' -57.3 NC_001973.1 + 105883 0.66 0.870965
Target:  5'- -gGUgGCGACGACGCcgagCUGGcGCucGCCc -3'
miRNA:   3'- cgCGgCGCUGUUGCGa---GACU-CGu-CGG- -5'
7690 3' -57.3 NC_001973.1 + 23267 0.66 0.870965
Target:  5'- cCGCCGCG-C-GCGCUUgcccGGCGGCg -3'
miRNA:   3'- cGCGGCGCuGuUGCGAGac--UCGUCGg -5'
7690 3' -57.3 NC_001973.1 + 84178 0.66 0.869512
Target:  5'- gGCGCCGcCGACcugcaaaaucgcaucGCGCgacucgaggccgagUC-GAGCGGCCu -3'
miRNA:   3'- -CGCGGC-GCUGu--------------UGCG--------------AGaCUCGUCGG- -5'
7690 3' -57.3 NC_001973.1 + 46215 0.66 0.868783
Target:  5'- uCGCgCGCGACGgccgggucaugugcGCGCUgUGccGCAGCg -3'
miRNA:   3'- cGCG-GCGCUGU--------------UGCGAgACu-CGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.