miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7690 5' -51.1 NC_001973.1 + 27473 0.66 0.995625
Target:  5'- uGGuGCCGCGaCAGGcGCCGCUC-UUGa -3'
miRNA:   3'- -CCuUGGUGUaGUUCuCGGUGAGcAGC- -5'
7690 5' -51.1 NC_001973.1 + 124795 0.66 0.995625
Target:  5'- -uGGCCGCcggCGAGGGCCGgggcCUCGaUCGg -3'
miRNA:   3'- ccUUGGUGua-GUUCUCGGU----GAGC-AGC- -5'
7690 5' -51.1 NC_001973.1 + 110165 0.66 0.995625
Target:  5'- aGAGCgGCAagUggGAGCCGCUCa--- -3'
miRNA:   3'- cCUUGgUGUa-GuuCUCGGUGAGcagc -5'
7690 5' -51.1 NC_001973.1 + 78841 0.66 0.995625
Target:  5'- aGGAugUACAUUA--AGCCcgAgUCGUCGg -3'
miRNA:   3'- -CCUugGUGUAGUucUCGG--UgAGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 136721 0.66 0.994905
Target:  5'- aGGAugCGCGaaAGGAGCgCGCgauGUCGa -3'
miRNA:   3'- -CCUugGUGUagUUCUCG-GUGag-CAGC- -5'
7690 5' -51.1 NC_001973.1 + 48695 0.66 0.994905
Target:  5'- cGGAuuucgAgCACAUCAAGcGCgCGCUCGagUCGu -3'
miRNA:   3'- -CCU-----UgGUGUAGUUCuCG-GUGAGC--AGC- -5'
7690 5' -51.1 NC_001973.1 + 146107 0.66 0.994093
Target:  5'- cGGGCCGCGgcgcuGAGCCGgCUCGggagCGg -3'
miRNA:   3'- cCUUGGUGUaguu-CUCGGU-GAGCa---GC- -5'
7690 5' -51.1 NC_001973.1 + 109299 0.66 0.994093
Target:  5'- cGGAGCgCGCGUCGGG-GUCGaggagcgCGUCGc -3'
miRNA:   3'- -CCUUG-GUGUAGUUCuCGGUga-----GCAGC- -5'
7690 5' -51.1 NC_001973.1 + 52195 0.66 0.994093
Target:  5'- cGGggUCGCGcgacUCGAGcAGCgACUCGaUCu -3'
miRNA:   3'- -CCuuGGUGU----AGUUC-UCGgUGAGC-AGc -5'
7690 5' -51.1 NC_001973.1 + 131598 0.66 0.994093
Target:  5'- uGGAGCCuC-UCGGccGCCGuCUCGUCGu -3'
miRNA:   3'- -CCUUGGuGuAGUUcuCGGU-GAGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 65463 0.66 0.993179
Target:  5'- cGAcuGCCAa---GAGAGCCACUCG-Ca -3'
miRNA:   3'- cCU--UGGUguagUUCUCGGUGAGCaGc -5'
7690 5' -51.1 NC_001973.1 + 157117 0.66 0.993179
Target:  5'- gGGAAaggUCACGUCGAGcuguaucuGCCGCUUGUg- -3'
miRNA:   3'- -CCUU---GGUGUAGUUCu-------CGGUGAGCAgc -5'
7690 5' -51.1 NC_001973.1 + 117429 0.66 0.992156
Target:  5'- -cGAUUGCAUCGcGA-CCGCUCGUCGu -3'
miRNA:   3'- ccUUGGUGUAGUuCUcGGUGAGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 25642 0.66 0.992156
Target:  5'- aGGGCgCGCGUCGacgcGGAGCCGaagcCGUCGc -3'
miRNA:   3'- cCUUG-GUGUAGU----UCUCGGUga--GCAGC- -5'
7690 5' -51.1 NC_001973.1 + 78195 0.66 0.992156
Target:  5'- gGGcAugCGCAUCAAcGAggcgcGCCACUugacCGUCGa -3'
miRNA:   3'- -CC-UugGUGUAGUU-CU-----CGGUGA----GCAGC- -5'
7690 5' -51.1 NC_001973.1 + 39813 0.66 0.992156
Target:  5'- cGGGCCACGgccuccgaCAGGGGCUccGCgCGUCGa -3'
miRNA:   3'- cCUUGGUGUa-------GUUCUCGG--UGaGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 145062 0.67 0.989745
Target:  5'- cGGAA-CACGUCAAGAGCguCgugagCGcCGg -3'
miRNA:   3'- -CCUUgGUGUAGUUCUCGguGa----GCaGC- -5'
7690 5' -51.1 NC_001973.1 + 83382 0.67 0.9892
Target:  5'- uGGucGCCAUgAUCAGGGGCUuuuucauacucgcCUCGUCGg -3'
miRNA:   3'- -CCu-UGGUG-UAGUUCUCGGu------------GAGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 120053 0.67 0.986791
Target:  5'- uGGAugUuguaguCGUUGAGGGUgCGCUCGUCGu -3'
miRNA:   3'- -CCUugGu-----GUAGUUCUCG-GUGAGCAGC- -5'
7690 5' -51.1 NC_001973.1 + 52721 0.67 0.986791
Target:  5'- --cGCCGCAgcUCGAGcGCCAggcggcgcguCUCGUCGu -3'
miRNA:   3'- ccuUGGUGU--AGUUCuCGGU----------GAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.