miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7692 5' -54.6 NC_001973.1 + 6954 0.66 0.960592
Target:  5'- cGCACGgccuccgGC-UGCUCGCC-CGaacaGGGCCg -3'
miRNA:   3'- -CGUGCa------CGuACGGGUGGaGCa---UCUGG- -5'
7692 5' -54.6 NC_001973.1 + 140682 0.66 0.960592
Target:  5'- uGUACGUGCA-GCCCGgcacguCCgUGUAcGCCa -3'
miRNA:   3'- -CGUGCACGUaCGGGU------GGaGCAUcUGG- -5'
7692 5' -54.6 NC_001973.1 + 33932 0.66 0.960592
Target:  5'- gGCACGUGCAccgucacguUGgUCAucuCCUCGUAcaGCCg -3'
miRNA:   3'- -CGUGCACGU---------ACgGGU---GGAGCAUc-UGG- -5'
7692 5' -54.6 NC_001973.1 + 55633 0.66 0.960237
Target:  5'- cGCGCGUGCAggucGCUCAagcgCGUcggaugggagccgAGGCCg -3'
miRNA:   3'- -CGUGCACGUa---CGGGUgga-GCA-------------UCUGG- -5'
7692 5' -54.6 NC_001973.1 + 143010 0.66 0.959519
Target:  5'- cGCACcugaaGCAgcugUGCCCcgcgggcuaccacgGCCUCGUcgaGGACCc -3'
miRNA:   3'- -CGUGca---CGU----ACGGG--------------UGGAGCA---UCUGG- -5'
7692 5' -54.6 NC_001973.1 + 157226 0.66 0.956936
Target:  5'- aGCACGccCAcgGCCCACCagUCGaAGugCa -3'
miRNA:   3'- -CGUGCacGUa-CGGGUGG--AGCaUCugG- -5'
7692 5' -54.6 NC_001973.1 + 88771 0.66 0.956936
Target:  5'- gGCAcuCGUGCccGCUCACCgugUUGUAcGCCa -3'
miRNA:   3'- -CGU--GCACGuaCGGGUGG---AGCAUcUGG- -5'
7692 5' -54.6 NC_001973.1 + 89761 0.66 0.956936
Target:  5'- cGCGgGUGCAgGUCCACCgacgaGUcGACg -3'
miRNA:   3'- -CGUgCACGUaCGGGUGGag---CAuCUGg -5'
7692 5' -54.6 NC_001973.1 + 138545 0.66 0.956936
Target:  5'- uGCACuUGCAcgcGCUCGCCgUCGUAuuugacuucGGCCa -3'
miRNA:   3'- -CGUGcACGUa--CGGGUGG-AGCAU---------CUGG- -5'
7692 5' -54.6 NC_001973.1 + 4318 0.66 0.956936
Target:  5'- aGCGCGccCA-GCCCGCgCUCGacGACCu -3'
miRNA:   3'- -CGUGCacGUaCGGGUG-GAGCauCUGG- -5'
7692 5' -54.6 NC_001973.1 + 6327 0.66 0.955795
Target:  5'- uCAauUGCAUGCgCCGCgUCGUgugcggcgucgaggGGGCCg -3'
miRNA:   3'- cGUgcACGUACG-GGUGgAGCA--------------UCUGG- -5'
7692 5' -54.6 NC_001973.1 + 63100 0.66 0.953055
Target:  5'- cGUugGUGCAcGCCguggagaaggCGCCgcuuUCGUuGACCg -3'
miRNA:   3'- -CGugCACGUaCGG----------GUGG----AGCAuCUGG- -5'
7692 5' -54.6 NC_001973.1 + 90483 0.66 0.953055
Target:  5'- aCGCGgGCAccaCCACUUCGUAGAUg -3'
miRNA:   3'- cGUGCaCGUacgGGUGGAGCAUCUGg -5'
7692 5' -54.6 NC_001973.1 + 74165 0.66 0.948945
Target:  5'- cGCGCa-GCGauacUGCCCGCCgUCGaAGACg -3'
miRNA:   3'- -CGUGcaCGU----ACGGGUGG-AGCaUCUGg -5'
7692 5' -54.6 NC_001973.1 + 39550 0.66 0.948945
Target:  5'- uCGauUGCAcGCCCGCCUgCGUgacgaAGGCCu -3'
miRNA:   3'- cGUgcACGUaCGGGUGGA-GCA-----UCUGG- -5'
7692 5' -54.6 NC_001973.1 + 45227 0.66 0.948521
Target:  5'- cCGCGUGCugccgGCCCGCCaccuggcucauguUCuGcGGGCCg -3'
miRNA:   3'- cGUGCACGua---CGGGUGG-------------AG-CaUCUGG- -5'
7692 5' -54.6 NC_001973.1 + 109193 0.66 0.944603
Target:  5'- aGCGCGccgcGCAgccgGCCCAgCUCGgccucGAUCg -3'
miRNA:   3'- -CGUGCa---CGUa---CGGGUgGAGCau---CUGG- -5'
7692 5' -54.6 NC_001973.1 + 31330 0.66 0.944603
Target:  5'- cGCACGcGCAUgcacauggcGCCCGCgCUcugCGUGGucGCCg -3'
miRNA:   3'- -CGUGCaCGUA---------CGGGUG-GA---GCAUC--UGG- -5'
7692 5' -54.6 NC_001973.1 + 31760 0.67 0.940026
Target:  5'- cGCGCGcGC-UGCCCACCaaCG-AGAUg -3'
miRNA:   3'- -CGUGCaCGuACGGGUGGa-GCaUCUGg -5'
7692 5' -54.6 NC_001973.1 + 42271 0.67 0.940026
Target:  5'- aGCua-UGCuaGCCCGCCUC-UGGGCCu -3'
miRNA:   3'- -CGugcACGuaCGGGUGGAGcAUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.