miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7694 3' -59.4 NC_001973.1 + 90400 0.66 0.79386
Target:  5'- --uUGCGGCGCGAacugcgaaacggcggUGUGcAGCGCGUg- -3'
miRNA:   3'- acuGCGUCGCGCU---------------GCAC-UCGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 136577 0.66 0.79031
Target:  5'- aUGGCGCuGCGCGcCG-GcGCGaCGCUc -3'
miRNA:   3'- -ACUGCGuCGCGCuGCaCuCGC-GCGAc -5'
7694 3' -59.4 NC_001973.1 + 65622 0.66 0.79031
Target:  5'- cGACGCgcuAGCGCc----GAGCGCGCUc -3'
miRNA:   3'- aCUGCG---UCGCGcugcaCUCGCGCGAc -5'
7694 3' -59.4 NC_001973.1 + 120990 0.66 0.79031
Target:  5'- uUGGcCGUcaaAGCGCucACGUcGGGCGCGUUGg -3'
miRNA:   3'- -ACU-GCG---UCGCGc-UGCA-CUCGCGCGAC- -5'
7694 3' -59.4 NC_001973.1 + 133109 0.66 0.789419
Target:  5'- gGACGUggagaggAGCGCG-CGUuuGAGCGCGg-- -3'
miRNA:   3'- aCUGCG-------UCGCGCuGCA--CUCGCGCgac -5'
7694 3' -59.4 NC_001973.1 + 104628 0.66 0.789419
Target:  5'- cGACGUgccucagaucgAGCGCGACGccGucgaacuccaaguAGCGCGCg- -3'
miRNA:   3'- aCUGCG-----------UCGCGCUGCa-C-------------UCGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 31628 0.66 0.784943
Target:  5'- -aGCGCGGCGUGcguauCGUGAGaauuuugcuaaagucCGCGCUc -3'
miRNA:   3'- acUGCGUCGCGCu----GCACUC---------------GCGCGAc -5'
7694 3' -59.4 NC_001973.1 + 32567 0.66 0.781339
Target:  5'- cGACGCcGC-CGuCGgcucGGCGCGCUGc -3'
miRNA:   3'- aCUGCGuCGcGCuGCac--UCGCGCGAC- -5'
7694 3' -59.4 NC_001973.1 + 95305 0.66 0.781339
Target:  5'- cGACGCgAGCGCG-CGcc-GCGCGUUc -3'
miRNA:   3'- aCUGCG-UCGCGCuGCacuCGCGCGAc -5'
7694 3' -59.4 NC_001973.1 + 120720 0.66 0.781339
Target:  5'- cUGAgCGCGGCGagaGAggaggcCGUGuGGCGCGCg- -3'
miRNA:   3'- -ACU-GCGUCGCg--CU------GCAC-UCGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 123528 0.66 0.781339
Target:  5'- cGGCGCAGUGCagcGCGUGAacgaauuuGuCGCGCc- -3'
miRNA:   3'- aCUGCGUCGCGc--UGCACU--------C-GCGCGac -5'
7694 3' -59.4 NC_001973.1 + 32152 0.66 0.781339
Target:  5'- -cGCGCAGCGCGAugcaCGUGuuuuGCaCGCa- -3'
miRNA:   3'- acUGCGUCGCGCU----GCACu---CGcGCGac -5'
7694 3' -59.4 NC_001973.1 + 5020 0.66 0.778623
Target:  5'- cGACGguGCGCucuucucugcugucGGCGuUGAGaaaGCGCa- -3'
miRNA:   3'- aCUGCguCGCG--------------CUGC-ACUCg--CGCGac -5'
7694 3' -59.4 NC_001973.1 + 3015 0.66 0.772241
Target:  5'- cGACGCAuuuaaaguGCuucgguaaguaGCGGCaGUGGGUGCGCa- -3'
miRNA:   3'- aCUGCGU--------CG-----------CGCUG-CACUCGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 46085 0.66 0.772241
Target:  5'- cUGACGUGGCucguGCGcuacggccGCGUGccCGCGCUGg -3'
miRNA:   3'- -ACUGCGUCG----CGC--------UGCACucGCGCGAC- -5'
7694 3' -59.4 NC_001973.1 + 6031 0.66 0.772241
Target:  5'- cGACG-AGCGCGcucCGuUGAcGCGCGCg- -3'
miRNA:   3'- aCUGCgUCGCGCu--GC-ACU-CGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 39454 0.66 0.772241
Target:  5'- cGAUGCccAGCuCGACGUaucgGuGCGCGUUGa -3'
miRNA:   3'- aCUGCG--UCGcGCUGCA----CuCGCGCGAC- -5'
7694 3' -59.4 NC_001973.1 + 49683 0.66 0.772241
Target:  5'- cGACGCGGCGaugGACcuGUcGAGCcGCGCc- -3'
miRNA:   3'- aCUGCGUCGCg--CUG--CA-CUCG-CGCGac -5'
7694 3' -59.4 NC_001973.1 + 73735 0.66 0.772241
Target:  5'- cUGAUGCccAGCGCGuucGCGUc-GCGCGCg- -3'
miRNA:   3'- -ACUGCG--UCGCGC---UGCAcuCGCGCGac -5'
7694 3' -59.4 NC_001973.1 + 134793 0.66 0.772241
Target:  5'- cGAUGCGGcCGuCGGCGUG-GUGcCGCg- -3'
miRNA:   3'- aCUGCGUC-GC-GCUGCACuCGC-GCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.