miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7694 5' -58.9 NC_001973.1 + 30375 0.66 0.783152
Target:  5'- cGCGGCGacucgGgUGcGGGccGGCGCGGCg- -3'
miRNA:   3'- aCGUUGCa----CgACaCCC--UCGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 95760 0.66 0.783152
Target:  5'- aGau-CGUGCUcggcGUGGccauguacGGGCGCGGCUGg -3'
miRNA:   3'- aCguuGCACGA----CACC--------CUCGCGCCGAU- -5'
7694 5' -58.9 NC_001973.1 + 46106 0.66 0.773903
Target:  5'- gGCcGCGUGCccgcgcuGGAcGCGCGGCUGc -3'
miRNA:   3'- aCGuUGCACGacac---CCU-CGCGCCGAU- -5'
7694 5' -58.9 NC_001973.1 + 28639 0.67 0.716092
Target:  5'- cGCAGCGaguccugcaGCUGcGcGAGCGCGGCg- -3'
miRNA:   3'- aCGUUGCa--------CGACaCcCUCGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 3039 0.67 0.706155
Target:  5'- aGUAGCG-GCaGUGGGuGCGCauuagcgcuuGGCUGu -3'
miRNA:   3'- aCGUUGCaCGaCACCCuCGCG----------CCGAU- -5'
7694 5' -58.9 NC_001973.1 + 132546 0.67 0.696156
Target:  5'- cGCGGCG-GCg--GGcucGAGCGCGGCg- -3'
miRNA:   3'- aCGUUGCaCGacaCC---CUCGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 74556 0.67 0.686104
Target:  5'- cGCAAauacaUUGUGGGAuGCGCGGCg- -3'
miRNA:   3'- aCGUUgcac-GACACCCU-CGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 132439 0.7 0.544424
Target:  5'- aGCGugGUGgaGgcgccgGcGGGGCGCGGCc- -3'
miRNA:   3'- aCGUugCACgaCa-----C-CCUCGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 5058 0.7 0.524704
Target:  5'- cGCAGCGUcaaGCgg-GGGAcgcGCGCGGCg- -3'
miRNA:   3'- aCGUUGCA---CGacaCCCU---CGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 61113 0.71 0.448965
Target:  5'- aGCAGCG-GCg--GcGGGGCGCGGCg- -3'
miRNA:   3'- aCGUUGCaCGacaC-CCUCGCGCCGau -5'
7694 5' -58.9 NC_001973.1 + 115522 1.06 0.002034
Target:  5'- gUGCAACGUGCUGUGGGAGCGCGGCUAc -3'
miRNA:   3'- -ACGUUGCACGACACCCUCGCGCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.