miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7695 3' -56.9 NC_001973.1 + 106963 0.66 0.915298
Target:  5'- cCGGGCGCgcucgGCGUGcGCGCG--CUGCa -3'
miRNA:   3'- aGCUCGUGa----UGCACcUGCGCugGGCG- -5'
7695 3' -56.9 NC_001973.1 + 95567 0.66 0.915298
Target:  5'- gUCGuGgACUACG-GGcGCGCGcaccGCUCGCu -3'
miRNA:   3'- -AGCuCgUGAUGCaCC-UGCGC----UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 23383 0.66 0.915298
Target:  5'- cCGAGUACUuuGcGGGCGUGACggcgagCGCg -3'
miRNA:   3'- aGCUCGUGAugCaCCUGCGCUGg-----GCG- -5'
7695 3' -56.9 NC_001973.1 + 95081 0.66 0.914156
Target:  5'- uUCGAGgCGCUGCagcgcucguGCGCGGgCCGCg -3'
miRNA:   3'- -AGCUC-GUGAUGcacc-----UGCGCUgGGCG- -5'
7695 3' -56.9 NC_001973.1 + 70091 0.66 0.909497
Target:  5'- cUCGAuGUugUGCGcGaGCGCGaacgccucggcGCCCGCg -3'
miRNA:   3'- -AGCU-CGugAUGCaCcUGCGC-----------UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 96566 0.66 0.909497
Target:  5'- uUUGGGCGacgauCUGCGcGGugGCGGCggCGCu -3'
miRNA:   3'- -AGCUCGU-----GAUGCaCCugCGCUGg-GCG- -5'
7695 3' -56.9 NC_001973.1 + 109855 0.66 0.909497
Target:  5'- gUCGccgcCGCcgACGaGGACGCGGCgCGCg -3'
miRNA:   3'- -AGCuc--GUGa-UGCaCCUGCGCUGgGCG- -5'
7695 3' -56.9 NC_001973.1 + 23559 0.66 0.909497
Target:  5'- cUCGAcCGCagcCGgccggcGGACGCGccGCCCGCg -3'
miRNA:   3'- -AGCUcGUGau-GCa-----CCUGCGC--UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 102396 0.66 0.909497
Target:  5'- aUCGAcCGCaACGUgagcgagagucuGGACGCG-CUCGCg -3'
miRNA:   3'- -AGCUcGUGaUGCA------------CCUGCGCuGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 128162 0.66 0.90347
Target:  5'- cCGAGgGCUugGUGaucacauccuGCGCGAugUCCGCc -3'
miRNA:   3'- aGCUCgUGAugCACc---------UGCGCU--GGGCG- -5'
7695 3' -56.9 NC_001973.1 + 16135 0.66 0.902238
Target:  5'- gCGAGCacgcgccGCUACagcauucgucgcuGUGGACGCacacggcGCCCGUg -3'
miRNA:   3'- aGCUCG-------UGAUG-------------CACCUGCGc------UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 23796 0.66 0.902238
Target:  5'- gUCGAGUACggccacuucuuCG-GcGACGCGGCCCu- -3'
miRNA:   3'- -AGCUCGUGau---------GCaC-CUGCGCUGGGcg -5'
7695 3' -56.9 NC_001973.1 + 96857 0.66 0.89722
Target:  5'- -gGAGCACgugcaggaaaACGUGGugGCcgcgGAUCUGUg -3'
miRNA:   3'- agCUCGUGa---------UGCACCugCG----CUGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 24282 0.66 0.89722
Target:  5'- gCGGGCGCcucgGCGaaUGGGCGaccaCGGCgCGCg -3'
miRNA:   3'- aGCUCGUGa---UGC--ACCUGC----GCUGgGCG- -5'
7695 3' -56.9 NC_001973.1 + 104748 0.66 0.89722
Target:  5'- gUCGcGCACU-CGgcGGACGC--CCCGCc -3'
miRNA:   3'- -AGCuCGUGAuGCa-CCUGCGcuGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 117888 0.66 0.89722
Target:  5'- aCGAGC-CggaGCGUcGACGCGACCa-- -3'
miRNA:   3'- aGCUCGuGa--UGCAcCUGCGCUGGgcg -5'
7695 3' -56.9 NC_001973.1 + 22464 0.66 0.89722
Target:  5'- uUCGAGCGCaACG-GGAuCGUGAaUUGCg -3'
miRNA:   3'- -AGCUCGUGaUGCaCCU-GCGCUgGGCG- -5'
7695 3' -56.9 NC_001973.1 + 153913 0.66 0.89075
Target:  5'- cCGAGC-CUGCa--GACGCcgaGCCCGCu -3'
miRNA:   3'- aGCUCGuGAUGcacCUGCGc--UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 24127 0.66 0.89075
Target:  5'- cCGGGCgaGCUcGCG-GGuGCGCGcgccGCCCGCc -3'
miRNA:   3'- aGCUCG--UGA-UGCaCC-UGCGC----UGGGCG- -5'
7695 3' -56.9 NC_001973.1 + 40196 0.66 0.89075
Target:  5'- aCGGGCACgucuccgaacAgGUGcGACGCGAUCagCGCg -3'
miRNA:   3'- aGCUCGUGa---------UgCAC-CUGCGCUGG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.