miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7696 3' -46.6 NC_001973.1 + 55284 0.66 0.999956
Target:  5'- uUUCCuGaCGuUGCUGuCGAAUAUCguuagCGCg -3'
miRNA:   3'- gAAGG-C-GUuACGAC-GUUUAUAGa----GCG- -5'
7696 3' -46.6 NC_001973.1 + 141015 0.66 0.999956
Target:  5'- uUUCCaCAAagGcCUGCAGcUGUUUCGCa -3'
miRNA:   3'- gAAGGcGUUa-C-GACGUUuAUAGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 34920 0.66 0.999921
Target:  5'- gCUUCCGUGGcGCgaGCGAg---CUCGCg -3'
miRNA:   3'- -GAAGGCGUUaCGa-CGUUuauaGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 40354 0.66 0.999864
Target:  5'- -gUCCGCGGUGaccgUGUccGUGUC-CGCg -3'
miRNA:   3'- gaAGGCGUUACg---ACGuuUAUAGaGCG- -5'
7696 3' -46.6 NC_001973.1 + 46000 0.66 0.999864
Target:  5'- --gCCGCGAUGCcggcgcGCGAGcgccUGUCUgGCc -3'
miRNA:   3'- gaaGGCGUUACGa-----CGUUU----AUAGAgCG- -5'
7696 3' -46.6 NC_001973.1 + 99976 0.67 0.999772
Target:  5'- ---gCGCGcgGCUGCAGGUAa--CGCg -3'
miRNA:   3'- gaagGCGUuaCGACGUUUAUagaGCG- -5'
7696 3' -46.6 NC_001973.1 + 33542 0.67 0.999772
Target:  5'- gUUCuCGUAGUGCaGCA-GUAUCUUGa -3'
miRNA:   3'- gAAG-GCGUUACGaCGUuUAUAGAGCg -5'
7696 3' -46.6 NC_001973.1 + 27745 0.67 0.999708
Target:  5'- -gUCaUGCAcgGCgGCAGGUucacUCUCGCc -3'
miRNA:   3'- gaAG-GCGUuaCGaCGUUUAu---AGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 113935 0.67 0.999629
Target:  5'- -aUCCGCGA-GCaUGCAcacGAgccggCUCGCg -3'
miRNA:   3'- gaAGGCGUUaCG-ACGU---UUaua--GAGCG- -5'
7696 3' -46.6 NC_001973.1 + 91861 0.68 0.999533
Target:  5'- -aUCUGCAA--CUGCAuuUGgugCUCGCg -3'
miRNA:   3'- gaAGGCGUUacGACGUuuAUa--GAGCG- -5'
7696 3' -46.6 NC_001973.1 + 35403 0.68 0.999414
Target:  5'- --aCCGCGccGCgcGCAAGUcUUUCGCg -3'
miRNA:   3'- gaaGGCGUuaCGa-CGUUUAuAGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 140121 0.68 0.999271
Target:  5'- --gCCGUGAUGCUGguGu--UCUCGg -3'
miRNA:   3'- gaaGGCGUUACGACguUuauAGAGCg -5'
7696 3' -46.6 NC_001973.1 + 36780 0.69 0.998647
Target:  5'- ---gCGCGAcgcGCUcGCAAAcUAUCUCGCg -3'
miRNA:   3'- gaagGCGUUa--CGA-CGUUU-AUAGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 2090 0.7 0.994498
Target:  5'- uCUUCCGCAAUcGCcgGCGcGUA-CUUGCc -3'
miRNA:   3'- -GAAGGCGUUA-CGa-CGUuUAUaGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 62171 0.71 0.993589
Target:  5'- cCUUCCGUguGAUGCggUGCGAGga--UCGCa -3'
miRNA:   3'- -GAAGGCG--UUACG--ACGUUUauagAGCG- -5'
7696 3' -46.6 NC_001973.1 + 129774 0.71 0.988684
Target:  5'- -gUCCGCGcaccGCUGCAGAggGUCguccugCGCg -3'
miRNA:   3'- gaAGGCGUua--CGACGUUUa-UAGa-----GCG- -5'
7696 3' -46.6 NC_001973.1 + 15415 0.76 0.906851
Target:  5'- aUUCCGCGAUGCggucgUGCAGAUcgugcguguagccgAUCUUGUa -3'
miRNA:   3'- gAAGGCGUUACG-----ACGUUUA--------------UAGAGCG- -5'
7696 3' -46.6 NC_001973.1 + 115177 1.13 0.013627
Target:  5'- cCUUCCGCAAUGCUGCAAAUAUCUCGCc -3'
miRNA:   3'- -GAAGGCGUUACGACGUUUAUAGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.