miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 3' -55.6 NC_001973.1 + 33399 0.68 0.855373
Target:  5'- gACGCGUCCGCgcaauccauCGucAGCUCGGUguc-GCg -3'
miRNA:   3'- -UGCGCAGGCG---------GC--UCGAGUCAaaucCG- -5'
7697 3' -55.6 NC_001973.1 + 83875 0.68 0.855373
Target:  5'- cGCGCG-CgGCgCGAGCUCAGgg-AGcaGCa -3'
miRNA:   3'- -UGCGCaGgCG-GCUCGAGUCaaaUC--CG- -5'
7697 3' -55.6 NC_001973.1 + 136430 0.68 0.847509
Target:  5'- cACGCG-CUGCgCGAGCgCAG---GGGCg -3'
miRNA:   3'- -UGCGCaGGCG-GCUCGaGUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 110347 0.68 0.839451
Target:  5'- gACGCGUUCGCCGc-CUCGGc---GGCc -3'
miRNA:   3'- -UGCGCAGGCGGCucGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 122664 0.68 0.831206
Target:  5'- aACGCGgcgCCGUCGGGC-CAGaacgcgcGGCg -3'
miRNA:   3'- -UGCGCa--GGCGGCUCGaGUCaaau---CCG- -5'
7697 3' -55.6 NC_001973.1 + 104246 0.69 0.82278
Target:  5'- uGCGCGUCCGUCagcuGUUCGGcggcGGCg -3'
miRNA:   3'- -UGCGCAGGCGGcu--CGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 12513 0.69 0.82278
Target:  5'- uACGCGUCgGCCG-GCUCAaaUUGaacGGUa -3'
miRNA:   3'- -UGCGCAGgCGGCuCGAGUcaAAU---CCG- -5'
7697 3' -55.6 NC_001973.1 + 2708 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 2826 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 21185 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 56400 0.69 0.814182
Target:  5'- uCGgGcUCgaaGCCGAGCUCGGUaucGGGCu -3'
miRNA:   3'- uGCgC-AGg--CGGCUCGAGUCAaa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 84311 0.69 0.814182
Target:  5'- cCGCGUCCGCCGcccaggacgucAGCUaCGGcc--GGCu -3'
miRNA:   3'- uGCGCAGGCGGC-----------UCGA-GUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 136679 0.69 0.814182
Target:  5'- aGCGCGaUCCGCaCGAucuGUUCG--UUGGGCg -3'
miRNA:   3'- -UGCGC-AGGCG-GCU---CGAGUcaAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 1806 0.69 0.805419
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgcacaCGGcc-AGGCu -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa------GUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 20066 0.69 0.805419
Target:  5'- aACGCGUacugguccCCGCCGAGCgagcacaCGGcc-AGGCu -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa------GUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 29958 0.69 0.805419
Target:  5'- aGCcCGUacagagaCGCCG-GCUCGGUggUGGGCg -3'
miRNA:   3'- -UGcGCAg------GCGGCuCGAGUCAa-AUCCG- -5'
7697 3' -55.6 NC_001973.1 + 128104 0.69 0.805419
Target:  5'- aACGCGUacugguccCCGCCGAGCgagcacaCGGcc-AGGCu -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa------GUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 113213 0.69 0.796499
Target:  5'- cACGCGUCCGCCGcGU--AGac-GGGCu -3'
miRNA:   3'- -UGCGCAGGCGGCuCGagUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 23204 0.69 0.787432
Target:  5'- cGCGCG-CCGaCGAGCgcgCAGUggcgcaGGGCc -3'
miRNA:   3'- -UGCGCaGGCgGCUCGa--GUCAaa----UCCG- -5'
7697 3' -55.6 NC_001973.1 + 150983 0.69 0.787432
Target:  5'- uACGCGUCgGCCGGGgUC-GUUaaAGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGuCAAa-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.