miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 5' -54.3 NC_001973.1 + 117526 0.66 0.969161
Target:  5'- aGACUUCCA-CGGCggugggggugUCgu-CCGACGCg -3'
miRNA:   3'- aCUGGAGGUaGCUG----------GGauuGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 106562 0.66 0.966081
Target:  5'- cGACCcagcUCC-UCGAUCCgcgccaAGCuCGGCGCc -3'
miRNA:   3'- aCUGG----AGGuAGCUGGGa-----UUG-GCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 159380 0.66 0.966081
Target:  5'- cGACCUgCAggcgcCGuCCCUccAACgGAUGCa -3'
miRNA:   3'- aCUGGAgGUa----GCuGGGA--UUGgCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 86756 0.66 0.966081
Target:  5'- cGGCCUCguUCcGCgCCUucaaGGCCGGCuGCg -3'
miRNA:   3'- aCUGGAGguAGcUG-GGA----UUGGCUG-CG- -5'
7697 5' -54.3 NC_001973.1 + 26662 0.66 0.966081
Target:  5'- -cACgaCCGUCGaACCUUGAUCGAuCGCc -3'
miRNA:   3'- acUGgaGGUAGC-UGGGAUUGGCU-GCG- -5'
7697 5' -54.3 NC_001973.1 + 105334 0.66 0.965762
Target:  5'- cGACCUCCuUCG-CCgUGuuguucucgacgaAgCGGCGCg -3'
miRNA:   3'- aCUGGAGGuAGCuGGgAU-------------UgGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 95528 0.66 0.962791
Target:  5'- cUGACCagcgCCAUCGGC----GCCGGCGa -3'
miRNA:   3'- -ACUGGa---GGUAGCUGggauUGGCUGCg -5'
7697 5' -54.3 NC_001973.1 + 5749 0.66 0.959285
Target:  5'- gGGCCgCCGaagCGGCCCa---CGGCGCu -3'
miRNA:   3'- aCUGGaGGUa--GCUGGGauugGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 74739 0.66 0.959285
Target:  5'- gGGCaCUCCAcaUCGAgCC-AGCCGucguCGCc -3'
miRNA:   3'- aCUG-GAGGU--AGCUgGGaUUGGCu---GCG- -5'
7697 5' -54.3 NC_001973.1 + 35185 0.66 0.959285
Target:  5'- cGACCUCgucgCcgCGAUCaacGCCGACGUc -3'
miRNA:   3'- aCUGGAG----GuaGCUGGgauUGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 150282 0.66 0.959285
Target:  5'- --uUCUCuUGUCGGCCCgGGCCGcCGCu -3'
miRNA:   3'- acuGGAG-GUAGCUGGGaUUGGCuGCG- -5'
7697 5' -54.3 NC_001973.1 + 157948 0.66 0.959285
Target:  5'- aUGACCUCggcgGUCGAgUCgc-CCGGCGUg -3'
miRNA:   3'- -ACUGGAGg---UAGCUgGGauuGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 56360 0.66 0.955558
Target:  5'- gGGCC-CCGacUCGGCgCCgcGCuCGGCGCc -3'
miRNA:   3'- aCUGGaGGU--AGCUG-GGauUG-GCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 2076 0.66 0.955558
Target:  5'- --uUCUCaaaAUCGACUCUuccgcaaucGCCGGCGCg -3'
miRNA:   3'- acuGGAGg--UAGCUGGGAu--------UGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 56107 0.67 0.951606
Target:  5'- cGGCCUCCAuaUCGAaa--AACCGcaACGCg -3'
miRNA:   3'- aCUGGAGGU--AGCUgggaUUGGC--UGCG- -5'
7697 5' -54.3 NC_001973.1 + 90839 0.67 0.951606
Target:  5'- cGACCg--GUCGACUCgagaAGCgGGCGCg -3'
miRNA:   3'- aCUGGaggUAGCUGGGa---UUGgCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 25697 0.67 0.949125
Target:  5'- -cGCCgaagCCGUCGccgaaGCCUUGcgcgccgcccgcgccGCCGGCGCg -3'
miRNA:   3'- acUGGa---GGUAGC-----UGGGAU---------------UGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 62921 0.67 0.947425
Target:  5'- cGAgCgCCGauUCGACUCgGGCCGGCGUc -3'
miRNA:   3'- aCUgGaGGU--AGCUGGGaUUGGCUGCG- -5'
7697 5' -54.3 NC_001973.1 + 10169 0.67 0.947425
Target:  5'- -cGCCgggUgGUCGACCCgcacgaAGCCGuCGCg -3'
miRNA:   3'- acUGGa--GgUAGCUGGGa-----UUGGCuGCG- -5'
7697 5' -54.3 NC_001973.1 + 58745 0.67 0.944805
Target:  5'- cGGCgCgCCGUCGcGCCCcucguggaagaguGCCGGCGCg -3'
miRNA:   3'- aCUG-GaGGUAGC-UGGGau-----------UGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.