miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7699 5' -64.1 NC_001973.1 + 139011 0.66 0.57133
Target:  5'- cGCCGGcGCCaGCaGCUcCCGC-CACa -3'
miRNA:   3'- aCGGCCaCGGcCG-CGAcGGCGaGUGc -5'
7699 5' -64.1 NC_001973.1 + 139045 0.66 0.57133
Target:  5'- cUGCCGcGgaaGUCGGCGaagUGCCGUUCgaGCGc -3'
miRNA:   3'- -ACGGC-Ca--CGGCCGCg--ACGGCGAG--UGC- -5'
7699 5' -64.1 NC_001973.1 + 90291 0.66 0.57133
Target:  5'- gGCCGGUGUucaaGGCGCacaGUCGgUCGgCGg -3'
miRNA:   3'- aCGGCCACGg---CCGCGa--CGGCgAGU-GC- -5'
7699 5' -64.1 NC_001973.1 + 140028 0.66 0.570373
Target:  5'- aGCaCGGUGgCGG-GCUGCgcccgggCGCUCgACGa -3'
miRNA:   3'- aCG-GCCACgGCCgCGACG-------GCGAG-UGC- -5'
7699 5' -64.1 NC_001973.1 + 99821 0.66 0.55226
Target:  5'- cGCUcGcGUC-GCGCUGCCGCUCGuCGa -3'
miRNA:   3'- aCGGcCaCGGcCGCGACGGCGAGU-GC- -5'
7699 5' -64.1 NC_001973.1 + 128448 0.66 0.542796
Target:  5'- gGCCGcGUGCaCGGCGUucaUGCC-CUgCGCu -3'
miRNA:   3'- aCGGC-CACG-GCCGCG---ACGGcGA-GUGc -5'
7699 5' -64.1 NC_001973.1 + 120740 0.66 0.542796
Target:  5'- gGCCGuGUGgCGcGCGCaGCCGCcgACGu -3'
miRNA:   3'- aCGGC-CACgGC-CGCGaCGGCGagUGC- -5'
7699 5' -64.1 NC_001973.1 + 48725 0.66 0.533386
Target:  5'- aGUC-GUGCUuGCGCcGCUGCUCGCa -3'
miRNA:   3'- aCGGcCACGGcCGCGaCGGCGAGUGc -5'
7699 5' -64.1 NC_001973.1 + 5167 0.66 0.533386
Target:  5'- gGuuGGUGuCCGGCGCgaGCCacuGCggCACu -3'
miRNA:   3'- aCggCCAC-GGCCGCGa-CGG---CGa-GUGc -5'
7699 5' -64.1 NC_001973.1 + 83361 0.66 0.533386
Target:  5'- cGCCcgaucuGUGCCGGCuGCUgGUCGC-CAUGa -3'
miRNA:   3'- aCGGc-----CACGGCCG-CGA-CGGCGaGUGC- -5'
7699 5' -64.1 NC_001973.1 + 137263 0.66 0.533386
Target:  5'- aGCCGaGUGUgCGGCgGCggggcucgGCCGCgCGCGu -3'
miRNA:   3'- aCGGC-CACG-GCCG-CGa-------CGGCGaGUGC- -5'
7699 5' -64.1 NC_001973.1 + 23568 0.66 0.533386
Target:  5'- aGCCGGccGgCGGaCGC-GCCGCcCGCGc -3'
miRNA:   3'- aCGGCCa-CgGCC-GCGaCGGCGaGUGC- -5'
7699 5' -64.1 NC_001973.1 + 71487 0.66 0.524034
Target:  5'- cGgUGGUGCC-GCGCUaCCGCagCACGu -3'
miRNA:   3'- aCgGCCACGGcCGCGAcGGCGa-GUGC- -5'
7699 5' -64.1 NC_001973.1 + 133447 0.66 0.524034
Target:  5'- aGUCGaaGUCGGCGCgcggGUCGCgCACGg -3'
miRNA:   3'- aCGGCcaCGGCCGCGa---CGGCGaGUGC- -5'
7699 5' -64.1 NC_001973.1 + 5323 0.66 0.524034
Target:  5'- gGuuGGUGCCGuCGCUGUgCGC-CGCc -3'
miRNA:   3'- aCggCCACGGCcGCGACG-GCGaGUGc -5'
7699 5' -64.1 NC_001973.1 + 110336 0.67 0.514746
Target:  5'- aGCCGuUGCUGGaCGCguucGCCGcCUCGgCGg -3'
miRNA:   3'- aCGGCcACGGCC-GCGa---CGGC-GAGU-GC- -5'
7699 5' -64.1 NC_001973.1 + 114419 0.67 0.514746
Target:  5'- -aCCGGUcgcgaGCCuGCGCgcgaGCCGgCUCGCGa -3'
miRNA:   3'- acGGCCA-----CGGcCGCGa---CGGC-GAGUGC- -5'
7699 5' -64.1 NC_001973.1 + 67808 0.67 0.506445
Target:  5'- gGCCGGUgGCCGGgucggucugcaccgaGUcGCUGCUCugGc -3'
miRNA:   3'- aCGGCCA-CGGCCg--------------CGaCGGCGAGugC- -5'
7699 5' -64.1 NC_001973.1 + 136581 0.67 0.505526
Target:  5'- cGCUGcGcGCCGGCGCga-CGCUCAg- -3'
miRNA:   3'- aCGGC-CaCGGCCGCGacgGCGAGUgc -5'
7699 5' -64.1 NC_001973.1 + 8068 0.67 0.505526
Target:  5'- cGCUGGcGCuCGGCGCgcacgcguucCCGCUgACGg -3'
miRNA:   3'- aCGGCCaCG-GCCGCGac--------GGCGAgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.