miRNA display CGI


Results 1 - 20 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7700 5' -63.3 NC_001973.1 + 120829 0.66 0.63841
Target:  5'- cGUGCCCGCGgaCGCGGaCGCCGcGCacuUCGa- -3'
miRNA:   3'- -CGCGGGCGC--GUGUC-GCGGU-CG---AGCcc -5'
7700 5' -63.3 NC_001973.1 + 82500 0.66 0.63841
Target:  5'- cGCGCCUugccgGCGuCGCGGCcgGCCuGCagUUGGGu -3'
miRNA:   3'- -CGCGGG-----CGC-GUGUCG--CGGuCG--AGCCC- -5'
7700 5' -63.3 NC_001973.1 + 123890 0.66 0.63841
Target:  5'- aCGCUgGUGCAC-GUGCUcGaCUCGGGc -3'
miRNA:   3'- cGCGGgCGCGUGuCGCGGuC-GAGCCC- -5'
7700 5' -63.3 NC_001973.1 + 57900 0.66 0.63841
Target:  5'- gGCG-CCGCGCACcuccgGGUGCC-GCUCcuGGu -3'
miRNA:   3'- -CGCgGGCGCGUG-----UCGCGGuCGAGc-CC- -5'
7700 5' -63.3 NC_001973.1 + 120947 0.66 0.62874
Target:  5'- cGCGgUC-UGCACGGCgGCCAGCgcggCGGu -3'
miRNA:   3'- -CGCgGGcGCGUGUCG-CGGUCGa---GCCc -5'
7700 5' -63.3 NC_001973.1 + 121228 0.66 0.62874
Target:  5'- aGCGCCaCGCggcgGCGCGGCGCgucgCAGaacaGGGu -3'
miRNA:   3'- -CGCGG-GCG----CGUGUCGCG----GUCgag-CCC- -5'
7700 5' -63.3 NC_001973.1 + 152317 0.66 0.62874
Target:  5'- cGCGCUCGUuaucguggacGCGguGCGCgGGCg-GGGc -3'
miRNA:   3'- -CGCGGGCG----------CGUguCGCGgUCGagCCC- -5'
7700 5' -63.3 NC_001973.1 + 68025 0.66 0.627773
Target:  5'- gGCGCCCGCGUcgcGCGGCaCCAccaccacgauucuGCUCu-- -3'
miRNA:   3'- -CGCGGGCGCG---UGUCGcGGU-------------CGAGccc -5'
7700 5' -63.3 NC_001973.1 + 3779 0.66 0.625839
Target:  5'- cGCGCCCcguccacggccgccGCGCACaccaAGCGCgAGCcgUCGa- -3'
miRNA:   3'- -CGCGGG--------------CGCGUG----UCGCGgUCG--AGCcc -5'
7700 5' -63.3 NC_001973.1 + 55910 0.66 0.619072
Target:  5'- cGgGCUCGgGCuCGG-GCUcgGGCUCGGGc -3'
miRNA:   3'- -CgCGGGCgCGuGUCgCGG--UCGAGCCC- -5'
7700 5' -63.3 NC_001973.1 + 16178 0.66 0.619072
Target:  5'- gGCGCCCGUGU-CGGCGCaGGC-CGc- -3'
miRNA:   3'- -CGCGGGCGCGuGUCGCGgUCGaGCcc -5'
7700 5' -63.3 NC_001973.1 + 51587 0.66 0.619072
Target:  5'- cGCGCCCGgGCAUuauugauCGCgAGgagUCGGGa -3'
miRNA:   3'- -CGCGGGCgCGUGuc-----GCGgUCg--AGCCC- -5'
7700 5' -63.3 NC_001973.1 + 96001 0.66 0.619072
Target:  5'- aGCGCCgaaucgauacuCGacaagggaaaGUACGcGCGCgAGCUCGGGc -3'
miRNA:   3'- -CGCGG-----------GCg---------CGUGU-CGCGgUCGAGCCC- -5'
7700 5' -63.3 NC_001973.1 + 131772 0.66 0.619072
Target:  5'- cGCGgUUGaCG-ACGGCgGCCGGCUCGGu -3'
miRNA:   3'- -CGCgGGC-GCgUGUCG-CGGUCGAGCCc -5'
7700 5' -63.3 NC_001973.1 + 16903 0.66 0.619072
Target:  5'- cGCGCCgGCG-GCGGCGgCCu-CUCGGcGg -3'
miRNA:   3'- -CGCGGgCGCgUGUCGC-GGucGAGCC-C- -5'
7700 5' -63.3 NC_001973.1 + 32215 0.66 0.619072
Target:  5'- cCGCuuGCGCGCcccacGGCGCCuGauugaCGGGc -3'
miRNA:   3'- cGCGggCGCGUG-----UCGCGGuCga---GCCC- -5'
7700 5' -63.3 NC_001973.1 + 132538 0.66 0.619072
Target:  5'- cCGCCgG-GCGCGGCgGCgGGCUCGa- -3'
miRNA:   3'- cGCGGgCgCGUGUCG-CGgUCGAGCcc -5'
7700 5' -63.3 NC_001973.1 + 63608 0.66 0.618105
Target:  5'- cGCGCUcacggacgCGCGCACGGCcaaaucgGCC-GCgUGGGg -3'
miRNA:   3'- -CGCGG--------GCGCGUGUCG-------CGGuCGaGCCC- -5'
7700 5' -63.3 NC_001973.1 + 55855 0.66 0.613275
Target:  5'- cGCGCCCGCaacggcggccgaacCuuuuugggaccgGCGGCGgCAgGCUCGGGc -3'
miRNA:   3'- -CGCGGGCGc-------------G------------UGUCGCgGU-CGAGCCC- -5'
7700 5' -63.3 NC_001973.1 + 30391 0.66 0.609413
Target:  5'- cGgGCCgGCGCgGCGGCGgCGGCggaGGc -3'
miRNA:   3'- -CgCGGgCGCG-UGUCGCgGUCGag-CCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.