miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7702 3' -60 NC_001973.1 + 63893 0.66 0.72329
Target:  5'- uGGCGC-CUGUUCGUaaaaaugaaGCUCGAGCUGGa -3'
miRNA:   3'- -UCGUGcGACGGGCA---------CGGGUUCGACUa -5'
7702 3' -60 NC_001973.1 + 21489 0.66 0.713432
Target:  5'- gAGCGCGUcgcgGCCCGccgacucgagguUGCCCAGGUcgccgacgugccUGAUc -3'
miRNA:   3'- -UCGUGCGa---CGGGC------------ACGGGUUCG------------ACUA- -5'
7702 3' -60 NC_001973.1 + 102553 0.66 0.703505
Target:  5'- uGCGCGCUGCUCG-GCCUcaacuucaAGGC-GGUg -3'
miRNA:   3'- uCGUGCGACGGGCaCGGG--------UUCGaCUA- -5'
7702 3' -60 NC_001973.1 + 146550 0.66 0.703505
Target:  5'- cGGaCACGUcgcucagauUGCUCGUGUCC-AGCUGGc -3'
miRNA:   3'- -UC-GUGCG---------ACGGGCACGGGuUCGACUa -5'
7702 3' -60 NC_001973.1 + 104238 0.66 0.689511
Target:  5'- cGGCGCGCUGCgCGUccgucagcuguucgGCggcggcgccgccgCCGGGCUGGUc -3'
miRNA:   3'- -UCGUGCGACGgGCA--------------CG-------------GGUUCGACUA- -5'
7702 3' -60 NC_001973.1 + 52855 0.66 0.673405
Target:  5'- cGCGCGCgGCCgGUcgGUCC-AGCUGGc -3'
miRNA:   3'- uCGUGCGaCGGgCA--CGGGuUCGACUa -5'
7702 3' -60 NC_001973.1 + 96028 0.66 0.673405
Target:  5'- aAGUACGC-GCgCGaGCUCGGGCUGGg -3'
miRNA:   3'- -UCGUGCGaCGgGCaCGGGUUCGACUa -5'
7702 3' -60 NC_001973.1 + 65522 0.67 0.663294
Target:  5'- cGCGCGCUuuucgGCUCGcucucaUGUCCGAGCUGu- -3'
miRNA:   3'- uCGUGCGA-----CGGGC------ACGGGUUCGACua -5'
7702 3' -60 NC_001973.1 + 45973 0.67 0.653158
Target:  5'- cGGCGCGCUcGCCC-UGCUgucGCUGGUg -3'
miRNA:   3'- -UCGUGCGA-CGGGcACGGguuCGACUA- -5'
7702 3' -60 NC_001973.1 + 41707 0.67 0.643005
Target:  5'- cGCACGUUcGCCaCGUGCgCCGAGUUu-- -3'
miRNA:   3'- uCGUGCGA-CGG-GCACG-GGUUCGAcua -5'
7702 3' -60 NC_001973.1 + 141861 0.67 0.612528
Target:  5'- gAGCACGCucaUGUCgGUGCUCAucGGcCUGGUg -3'
miRNA:   3'- -UCGUGCG---ACGGgCACGGGU--UC-GACUA- -5'
7702 3' -60 NC_001973.1 + 21332 0.68 0.572126
Target:  5'- cGCACGCgaGCCgGccGCCCGAGUUGc- -3'
miRNA:   3'- uCGUGCGa-CGGgCa-CGGGUUCGACua -5'
7702 3' -60 NC_001973.1 + 50541 0.68 0.562114
Target:  5'- cAGCugGC-GCUCGUGCUCGAGUUu-- -3'
miRNA:   3'- -UCGugCGaCGGGCACGGGUUCGAcua -5'
7702 3' -60 NC_001973.1 + 7714 0.69 0.542239
Target:  5'- gAGCGCGCcGCCC--GCCCGAcugacGCUGGa -3'
miRNA:   3'- -UCGUGCGaCGGGcaCGGGUU-----CGACUa -5'
7702 3' -60 NC_001973.1 + 22430 0.69 0.542239
Target:  5'- cGC-CGC-GCCCGcGCCCAcggccuuggAGCUGGUg -3'
miRNA:   3'- uCGuGCGaCGGGCaCGGGU---------UCGACUA- -5'
7702 3' -60 NC_001973.1 + 45354 0.71 0.429323
Target:  5'- gGGCACGCUGCUCGUcgugcaguagccGCCUugcucgagcAGCUGGUc -3'
miRNA:   3'- -UCGUGCGACGGGCA------------CGGGu--------UCGACUA- -5'
7702 3' -60 NC_001973.1 + 94067 0.72 0.378273
Target:  5'- uGGCGCGCUGCCUcacGCCCGGcCUGGa -3'
miRNA:   3'- -UCGUGCGACGGGca-CGGGUUcGACUa -5'
7702 3' -60 NC_001973.1 + 46096 0.73 0.295816
Target:  5'- cGUGCGCUacgGCCgCGUGCCCGcGCUGGa -3'
miRNA:   3'- uCGUGCGA---CGG-GCACGGGUuCGACUa -5'
7702 3' -60 NC_001973.1 + 106916 0.76 0.211977
Target:  5'- aAGCGCGCgugcgcuucgUGUCCGUGCCCGcGUUGAa -3'
miRNA:   3'- -UCGUGCG----------ACGGGCACGGGUuCGACUa -5'
7702 3' -60 NC_001973.1 + 9594 0.77 0.17386
Target:  5'- cAGCACGCaucgGCCCGUGCCCGGagUGAa -3'
miRNA:   3'- -UCGUGCGa---CGGGCACGGGUUcgACUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.