miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7702 5' -49.6 NC_001973.1 + 7807 0.66 0.998581
Target:  5'- gGACCAcgcgcagcGCUUGcgcucucuguuGAGAACGgGcgGCgCCg -3'
miRNA:   3'- aCUGGU--------UGAAC-----------UUCUUGCgCuaCG-GG- -5'
7702 5' -49.6 NC_001973.1 + 158516 0.66 0.99829
Target:  5'- cGACCGGCUUGuuu-GCGcCGccGCCa -3'
miRNA:   3'- aCUGGUUGAACuucuUGC-GCuaCGGg -5'
7702 5' -49.6 NC_001973.1 + 153983 0.66 0.99829
Target:  5'- cGACgAgucugcGCUUGAAGAGC-CGGU-CCCu -3'
miRNA:   3'- aCUGgU------UGAACUUCUUGcGCUAcGGG- -5'
7702 5' -49.6 NC_001973.1 + 82920 0.66 0.99829
Target:  5'- cGACCGACgcgUucGGcGCGCcGAUcGCCCc -3'
miRNA:   3'- aCUGGUUGa--AcuUCuUGCG-CUA-CGGG- -5'
7702 5' -49.6 NC_001973.1 + 64107 0.66 0.99829
Target:  5'- aGGCCGACggcucGAcGGG-GCGGUGCCg -3'
miRNA:   3'- aCUGGUUGaa---CUuCUUgCGCUACGGg -5'
7702 5' -49.6 NC_001973.1 + 12066 0.66 0.998193
Target:  5'- cGAUCGACgUUGccGGACGaCGGucccgaugacaucaUGCCCa -3'
miRNA:   3'- aCUGGUUG-AACuuCUUGC-GCU--------------ACGGG- -5'
7702 5' -49.6 NC_001973.1 + 93923 0.66 0.997949
Target:  5'- aGACCGaaguggagguGCUgGAcGAGCGCGAgcUGCgCg -3'
miRNA:   3'- aCUGGU----------UGAaCUuCUUGCGCU--ACGgG- -5'
7702 5' -49.6 NC_001973.1 + 110069 0.66 0.997949
Target:  5'- ---gCAACgUGGAGGACGCGcUGUUCg -3'
miRNA:   3'- acugGUUGaACUUCUUGCGCuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 93500 0.66 0.997949
Target:  5'- aUGACgCAGUUUGccguGAACGCGcUGCUCg -3'
miRNA:   3'- -ACUG-GUUGAACuu--CUUGCGCuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 86451 0.66 0.997949
Target:  5'- cGGCCGcggcgGCggcgGAAGcGCGCGc-GCCCg -3'
miRNA:   3'- aCUGGU-----UGaa--CUUCuUGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 53567 0.66 0.997912
Target:  5'- cGGCCAugUcugcgacUGAGGcGCGCGccgGCgCCg -3'
miRNA:   3'- aCUGGUugA-------ACUUCuUGCGCua-CG-GG- -5'
7702 5' -49.6 NC_001973.1 + 145999 0.66 0.997553
Target:  5'- -aGCCGGCUcGggGAGCGgGuccGCCg -3'
miRNA:   3'- acUGGUUGAaCuuCUUGCgCua-CGGg -5'
7702 5' -49.6 NC_001973.1 + 142278 0.66 0.997553
Target:  5'- uUGACCAuCUUccggGAccGGAACGCGAU-CCg -3'
miRNA:   3'- -ACUGGUuGAA----CU--UCUUGCGCUAcGGg -5'
7702 5' -49.6 NC_001973.1 + 57560 0.66 0.997286
Target:  5'- uUGACCG---UGAAgucgagcagguucucGAAgGCGAUGUCCg -3'
miRNA:   3'- -ACUGGUugaACUU---------------CUUgCGCUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 36323 0.66 0.997095
Target:  5'- cGGCCGACgcGGccGACGCGG-GCCUc -3'
miRNA:   3'- aCUGGUUGaaCUucUUGCGCUaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 46191 0.66 0.997095
Target:  5'- cGGCCcucAACaUGAAGAacuguuucgcGCGCGAcgGCCg -3'
miRNA:   3'- aCUGG---UUGaACUUCU----------UGCGCUa-CGGg -5'
7702 5' -49.6 NC_001973.1 + 49092 0.66 0.997095
Target:  5'- cGucauCCAACUgauaaUGAAGAGCaaGcUGCCCu -3'
miRNA:   3'- aCu---GGUUGA-----ACUUCUUGcgCuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 99739 0.66 0.997095
Target:  5'- gGACCAACUcucguAGGGCGCGcgauUGUCg -3'
miRNA:   3'- aCUGGUUGAacu--UCUUGCGCu---ACGGg -5'
7702 5' -49.6 NC_001973.1 + 64656 0.66 0.997095
Target:  5'- aGGCCGcCUUGAAacGAUGCGA-GCCg -3'
miRNA:   3'- aCUGGUuGAACUUc-UUGCGCUaCGGg -5'
7702 5' -49.6 NC_001973.1 + 120370 0.67 0.996569
Target:  5'- cGGCCAAgacggcgagUUUGgcGGG-GCGAUGUCCg -3'
miRNA:   3'- aCUGGUU---------GAACuuCUUgCGCUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.