miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7702 5' -49.6 NC_001973.1 + 120370 0.67 0.996569
Target:  5'- cGGCCAAgacggcgagUUUGgcGGG-GCGAUGUCCg -3'
miRNA:   3'- aCUGGUU---------GAACuuCUUgCGCUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 86534 0.67 0.996569
Target:  5'- -cGCCGGCgcgccUGAAGAgcaugaACGCGGUcaGCCUg -3'
miRNA:   3'- acUGGUUGa----ACUUCU------UGCGCUA--CGGG- -5'
7702 5' -49.6 NC_001973.1 + 159620 0.67 0.995966
Target:  5'- aUGACCGAgUUGAGGAA----GUGCUCg -3'
miRNA:   3'- -ACUGGUUgAACUUCUUgcgcUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 57235 0.67 0.995966
Target:  5'- -cGCCGACgcGGAGGACaGCGAUuucGCCg -3'
miRNA:   3'- acUGGUUGaaCUUCUUG-CGCUA---CGGg -5'
7702 5' -49.6 NC_001973.1 + 44844 0.67 0.995966
Target:  5'- cGugCGACagcgcguccgcgUUGAAG-GCGUccacGAUGCCCa -3'
miRNA:   3'- aCugGUUG------------AACUUCuUGCG----CUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 43884 0.67 0.995966
Target:  5'- aGGCCGcguuuCUUGAGccaaaauauGGCGCGAaacUGCCCg -3'
miRNA:   3'- aCUGGUu----GAACUUc--------UUGCGCU---ACGGG- -5'
7702 5' -49.6 NC_001973.1 + 6908 0.67 0.995966
Target:  5'- cGGCCAguccaagaacgcGCUgu-GGAACGCGcUGCgCCu -3'
miRNA:   3'- aCUGGU------------UGAacuUCUUGCGCuACG-GG- -5'
7702 5' -49.6 NC_001973.1 + 68622 0.67 0.995901
Target:  5'- cGACCAGCUgacgcaaUGGGccagagacucGGACGCG--GCCCu -3'
miRNA:   3'- aCUGGUUGA-------ACUU----------CUUGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 135191 0.67 0.995279
Target:  5'- aUGGCgcuaAACUuuUGAAu-GCGCGGUGCUCg -3'
miRNA:   3'- -ACUGg---UUGA--ACUUcuUGCGCUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 54204 0.67 0.9945
Target:  5'- cGACCAcCUgcGAGGACGCcuccacGCCCa -3'
miRNA:   3'- aCUGGUuGAacUUCUUGCGcua---CGGG- -5'
7702 5' -49.6 NC_001973.1 + 36842 0.67 0.9945
Target:  5'- cGACCGGCcUGAGGGccgacucgGCGCGc-GCUCu -3'
miRNA:   3'- aCUGGUUGaACUUCU--------UGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 74970 0.67 0.9945
Target:  5'- aGGCCAGaacGggGGGCaGCGgGUGCUCg -3'
miRNA:   3'- aCUGGUUgaaCuuCUUG-CGC-UACGGG- -5'
7702 5' -49.6 NC_001973.1 + 143430 0.67 0.99362
Target:  5'- uUGAUCAGCUcGGcgGGAAUGU--UGCCCu -3'
miRNA:   3'- -ACUGGUUGAaCU--UCUUGCGcuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 78437 0.67 0.99362
Target:  5'- aGGCCGGCgUGGAGAugGaccgGCCg -3'
miRNA:   3'- aCUGGUUGaACUUCUugCgcuaCGGg -5'
7702 5' -49.6 NC_001973.1 + 100549 0.67 0.993526
Target:  5'- gUGGCCGACgaGcAcacauagcccaacGGGACGCGAUuguggugcagGCCCa -3'
miRNA:   3'- -ACUGGUUGaaC-U-------------UCUUGCGCUA----------CGGG- -5'
7702 5' -49.6 NC_001973.1 + 70441 0.68 0.993041
Target:  5'- cGACCGcccGCUcGGAGcucACGCGAUccaccagcggcaucaGCCCg -3'
miRNA:   3'- aCUGGU---UGAaCUUCu--UGCGCUA---------------CGGG- -5'
7702 5' -49.6 NC_001973.1 + 151772 0.68 0.992631
Target:  5'- gGGCCGccgcccaaaGCUUGGAcAugGUcGUGCCCg -3'
miRNA:   3'- aCUGGU---------UGAACUUcUugCGcUACGGG- -5'
7702 5' -49.6 NC_001973.1 + 6200 0.68 0.992631
Target:  5'- gUGAUCAACc---GGcGGCGCGGUGCCg -3'
miRNA:   3'- -ACUGGUUGaacuUC-UUGCGCUACGGg -5'
7702 5' -49.6 NC_001973.1 + 118595 0.68 0.992631
Target:  5'- cUGGgCGACgUGAAGGGCGUG-UGCgCg -3'
miRNA:   3'- -ACUgGUUGaACUUCUUGCGCuACGgG- -5'
7702 5' -49.6 NC_001973.1 + 96842 0.68 0.991523
Target:  5'- cGACUAucaaaACUUGGAGcacgugcaggaaAACGUGGUGgCCg -3'
miRNA:   3'- aCUGGU-----UGAACUUC------------UUGCGCUACgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.