miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7702 5' -49.6 NC_001973.1 + 4565 0.7 0.974696
Target:  5'- cGAUCcaGugUUGGccguAGAACGCGAuuccggccccgcUGCCCg -3'
miRNA:   3'- aCUGG--UugAACU----UCUUGCGCU------------ACGGG- -5'
7702 5' -49.6 NC_001973.1 + 5690 0.68 0.989482
Target:  5'- -cGCCcGCUuucgcgaggagugccUGAGGAGCGCGucGCCCc -3'
miRNA:   3'- acUGGuUGA---------------ACUUCUUGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 6200 0.68 0.992631
Target:  5'- gUGAUCAACc---GGcGGCGCGGUGCCg -3'
miRNA:   3'- -ACUGGUUGaacuUC-UUGCGCUACGGg -5'
7702 5' -49.6 NC_001973.1 + 6908 0.67 0.995966
Target:  5'- cGGCCAguccaagaacgcGCUgu-GGAACGCGcUGCgCCu -3'
miRNA:   3'- aCUGGU------------UGAacuUCUUGCGCuACG-GG- -5'
7702 5' -49.6 NC_001973.1 + 7692 0.68 0.991523
Target:  5'- cGugCAACggcagauucGAAacGAGCGCGccGCCCg -3'
miRNA:   3'- aCugGUUGaa-------CUU--CUUGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 7807 0.66 0.998581
Target:  5'- gGACCAcgcgcagcGCUUGcgcucucuguuGAGAACGgGcgGCgCCg -3'
miRNA:   3'- aCUGGU--------UGAAC-----------UUCUUGCgCuaCG-GG- -5'
7702 5' -49.6 NC_001973.1 + 12066 0.66 0.998193
Target:  5'- cGAUCGACgUUGccGGACGaCGGucccgaugacaucaUGCCCa -3'
miRNA:   3'- aCUGGUUG-AACuuCUUGC-GCU--------------ACGGG- -5'
7702 5' -49.6 NC_001973.1 + 13450 0.69 0.98187
Target:  5'- cGGCCAGCgucgUGgcGGAgGCcacGcgGCCCa -3'
miRNA:   3'- aCUGGUUGa---ACuuCUUgCG---CuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 17824 0.71 0.950346
Target:  5'- uUGAgCGACgcgccgucGAGGGugGCG-UGCCCg -3'
miRNA:   3'- -ACUgGUUGaa------CUUCUugCGCuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 23568 0.69 0.977285
Target:  5'- -aGCCGGCc-GgcGGACGCGccGCCCg -3'
miRNA:   3'- acUGGUUGaaCuuCUUGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 33983 0.68 0.990288
Target:  5'- aUGAUCAGCgaguugaugcggUUGucGAGCGCGucguccacgGCCCg -3'
miRNA:   3'- -ACUGGUUG------------AACuuCUUGCGCua-------CGGG- -5'
7702 5' -49.6 NC_001973.1 + 36323 0.66 0.997095
Target:  5'- cGGCCGACgcGGccGACGCGG-GCCUc -3'
miRNA:   3'- aCUGGUUGaaCUucUUGCGCUaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 36764 0.68 0.987397
Target:  5'- aGACCgAGCgaGAGGcGCGCGAcgcGCUCg -3'
miRNA:   3'- aCUGG-UUGaaCUUCuUGCGCUa--CGGG- -5'
7702 5' -49.6 NC_001973.1 + 36842 0.67 0.9945
Target:  5'- cGACCGGCcUGAGGGccgacucgGCGCGc-GCUCu -3'
miRNA:   3'- aCUGGUUGaACUUCU--------UGCGCuaCGGG- -5'
7702 5' -49.6 NC_001973.1 + 40593 0.69 0.985723
Target:  5'- aGGCCAGgauaUUGGcGGAGCGCGccGCCg -3'
miRNA:   3'- aCUGGUUg---AACU-UCUUGCGCuaCGGg -5'
7702 5' -49.6 NC_001973.1 + 40727 0.7 0.971607
Target:  5'- aGGCCAcgcGCUcgcGGAGAugggucgccgcggACGCGcUGCCCg -3'
miRNA:   3'- aCUGGU---UGAa--CUUCU-------------UGCGCuACGGG- -5'
7702 5' -49.6 NC_001973.1 + 42607 0.69 0.98187
Target:  5'- gGugCGGCgc-GAGGGCGCGGUcGCCa -3'
miRNA:   3'- aCugGUUGaacUUCUUGCGCUA-CGGg -5'
7702 5' -49.6 NC_001973.1 + 43884 0.67 0.995966
Target:  5'- aGGCCGcguuuCUUGAGccaaaauauGGCGCGAaacUGCCCg -3'
miRNA:   3'- aCUGGUu----GAACUUc--------UUGCGCU---ACGGG- -5'
7702 5' -49.6 NC_001973.1 + 44745 0.74 0.857078
Target:  5'- cGuCCGugUucUGGAuGAACGCGGUGCCg -3'
miRNA:   3'- aCuGGUugA--ACUU-CUUGCGCUACGGg -5'
7702 5' -49.6 NC_001973.1 + 44844 0.67 0.995966
Target:  5'- cGugCGACagcgcguccgcgUUGAAG-GCGUccacGAUGCCCa -3'
miRNA:   3'- aCugGUUG------------AACUUCuUGCG----CUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.