miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 3' -64.4 NC_001973.1 + 124574 0.66 0.609074
Target:  5'- gCGUCGUCGCCuACGcggccaagcacuacaAGGACGCccGGCu -3'
miRNA:   3'- aGCGGCGGCGGcUGC---------------UCCUGCG--CCGc -5'
7703 3' -64.4 NC_001973.1 + 145999 0.66 0.608124
Target:  5'- -aGCCGgcucggggagcggguCCGCCGGCucgagcgcgggucGAcGGACGgGGCGa -3'
miRNA:   3'- agCGGC---------------GGCGGCUG-------------CU-CCUGCgCCGC- -5'
7703 3' -64.4 NC_001973.1 + 38141 0.66 0.605275
Target:  5'- aCGCgGCuuggauggggccCGCCGA-GAGGACG-GGCa -3'
miRNA:   3'- aGCGgCG------------GCGGCUgCUCCUGCgCCGc -5'
7703 3' -64.4 NC_001973.1 + 120946 0.66 0.595793
Target:  5'- gCGCgGuCUGCaCGGCGGccaGCGCGGCGg -3'
miRNA:   3'- aGCGgC-GGCG-GCUGCUcc-UGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 3738 0.66 0.595793
Target:  5'- -gGCCGUacaCGCCGACGGGcACGU-GCGa -3'
miRNA:   3'- agCGGCG---GCGGCUGCUCcUGCGcCGC- -5'
7703 3' -64.4 NC_001973.1 + 18266 0.66 0.595793
Target:  5'- gUCGgCGCacacgGCCGACGAGGGCacCaGCGc -3'
miRNA:   3'- -AGCgGCGg----CGGCUGCUCCUGc-GcCGC- -5'
7703 3' -64.4 NC_001973.1 + 83411 0.66 0.595793
Target:  5'- cUCGCC-UCGUCGGCGA---CGCGGCa -3'
miRNA:   3'- -AGCGGcGGCGGCUGCUccuGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 107992 0.66 0.595793
Target:  5'- cCGUCGUCGCCGAUGcGGuCGaaGCa -3'
miRNA:   3'- aGCGGCGGCGGCUGCuCCuGCgcCGc -5'
7703 3' -64.4 NC_001973.1 + 86995 0.66 0.595793
Target:  5'- cCGCC-CCGcCCGACGAcGACGaCGcGCu -3'
miRNA:   3'- aGCGGcGGC-GGCUGCUcCUGC-GC-CGc -5'
7703 3' -64.4 NC_001973.1 + 26071 0.66 0.587278
Target:  5'- gCGUCGCUGCCGAuCGAccaauugccgauuucGAUGUGGCa -3'
miRNA:   3'- aGCGGCGGCGGCU-GCUc--------------CUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 31046 0.66 0.586333
Target:  5'- gCGUCugaaCGCCGACGGcGGGCaGCGuGCGg -3'
miRNA:   3'- aGCGGcg--GCGGCUGCU-CCUG-CGC-CGC- -5'
7703 3' -64.4 NC_001973.1 + 36115 0.66 0.586333
Target:  5'- cUCGCCGCCGaCuACGcGGACGaauaucuguaCGGCa -3'
miRNA:   3'- -AGCGGCGGCgGcUGCuCCUGC----------GCCGc -5'
7703 3' -64.4 NC_001973.1 + 22738 0.66 0.585389
Target:  5'- -aGCCGCgGCCGuaucuguGCGAGG--GgGGCGa -3'
miRNA:   3'- agCGGCGgCGGC-------UGCUCCugCgCCGC- -5'
7703 3' -64.4 NC_001973.1 + 145077 0.66 0.582557
Target:  5'- gCGUCGUgagCGCCGGCGAGGGucugagcuucagaGUGGCc -3'
miRNA:   3'- aGCGGCG---GCGGCUGCUCCUg------------CGCCGc -5'
7703 3' -64.4 NC_001973.1 + 32069 0.66 0.576902
Target:  5'- gCGCUGCCaGCCcaGCGAgaagguGGGCGCGGgCa -3'
miRNA:   3'- aGCGGCGG-CGGc-UGCU------CCUGCGCC-Gc -5'
7703 3' -64.4 NC_001973.1 + 96592 0.66 0.576902
Target:  5'- gCGgCGCUGgCGACGAcggcGGACGCgcacGGCu -3'
miRNA:   3'- aGCgGCGGCgGCUGCU----CCUGCG----CCGc -5'
7703 3' -64.4 NC_001973.1 + 36836 0.66 0.576902
Target:  5'- aC-CCGCCGaCCGGCcuGAGGGCcgacuCGGCGc -3'
miRNA:   3'- aGcGGCGGC-GGCUG--CUCCUGc----GCCGC- -5'
7703 3' -64.4 NC_001973.1 + 86729 0.66 0.576902
Target:  5'- -gGCUGCgCGgCGACGAacggcGGcGCGCGGCc -3'
miRNA:   3'- agCGGCG-GCgGCUGCU-----CC-UGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 107115 0.66 0.567505
Target:  5'- cCGCCgGCUGUCG-CGAuacGACGCGaGCGa -3'
miRNA:   3'- aGCGG-CGGCGGCuGCUc--CUGCGC-CGC- -5'
7703 3' -64.4 NC_001973.1 + 109146 0.66 0.558148
Target:  5'- gCGCCGCC-UCGACGAGc-CG-GGCGa -3'
miRNA:   3'- aGCGGCGGcGGCUGCUCcuGCgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.