miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 3' -64.4 NC_001973.1 + 109855 1.07 0.000906
Target:  5'- gUCGCCGCCGCCGACGAGGACGCGGCGc -3'
miRNA:   3'- -AGCGGCGGCGGCUGCUCCUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 77297 0.87 0.024546
Target:  5'- cCGCCGCCGCCGAgaCGGGcGGCGCGGCu -3'
miRNA:   3'- aGCGGCGGCGGCU--GCUC-CUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 103909 0.82 0.055284
Target:  5'- cCGCCGCgGCgCGACGAGGAgcgcgucguCGCGGCGc -3'
miRNA:   3'- aGCGGCGgCG-GCUGCUCCU---------GCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 25927 0.82 0.061124
Target:  5'- cUCGCCGCCGCgGGCGGGcuCGCGGCc -3'
miRNA:   3'- -AGCGGCGGCGgCUGCUCcuGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 32556 0.8 0.078445
Target:  5'- aUCGCCGCCGCCGACGccGcCGuCGGCu -3'
miRNA:   3'- -AGCGGCGGCGGCUGCucCuGC-GCCGc -5'
7703 3' -64.4 NC_001973.1 + 9630 0.8 0.084501
Target:  5'- aUCGCCGCUGgCGuucggcuCGAGGGCGCGGUa -3'
miRNA:   3'- -AGCGGCGGCgGCu------GCUCCUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 14360 0.79 0.095594
Target:  5'- gUCGgCGUgGUCGACG-GGGCGCGGCGa -3'
miRNA:   3'- -AGCgGCGgCGGCUGCuCCUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 35673 0.78 0.110724
Target:  5'- aCGgCGCgGCCGACGGcggcgcGGugGCGGCGa -3'
miRNA:   3'- aGCgGCGgCGGCUGCU------CCugCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 61096 0.78 0.113179
Target:  5'- -gGCCGCgCgGCCGACGgagcagcggcggcGGGGCGCGGCGu -3'
miRNA:   3'- agCGGCG-G-CGGCUGC-------------UCCUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 122617 0.78 0.119106
Target:  5'- gUCGgCGgCGCCGACGcGGGCGCcGGCGu -3'
miRNA:   3'- -AGCgGCgGCGGCUGCuCCUGCG-CCGC- -5'
7703 3' -64.4 NC_001973.1 + 35442 0.77 0.131201
Target:  5'- gCGCgGUCGUCGACGAGG-CGgCGGCGc -3'
miRNA:   3'- aGCGgCGGCGGCUGCUCCuGC-GCCGC- -5'
7703 3' -64.4 NC_001973.1 + 88485 0.77 0.131201
Target:  5'- aCGgUGCCGCCGGCGcGG-CGCGGCu -3'
miRNA:   3'- aGCgGCGGCGGCUGCuCCuGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 5544 0.76 0.151478
Target:  5'- aCGCCGCCGUuggaGACGuGGGAccguuCGCGGCGa -3'
miRNA:   3'- aGCGGCGGCGg---CUGC-UCCU-----GCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 46486 0.76 0.155123
Target:  5'- gUCGCCGUCGCCcGCGcGGACGgccuCGGCGc -3'
miRNA:   3'- -AGCGGCGGCGGcUGCuCCUGC----GCCGC- -5'
7703 3' -64.4 NC_001973.1 + 35969 0.76 0.158847
Target:  5'- aCGCCuuucuguucGCCGCgGACGAGGugaGCGGCa -3'
miRNA:   3'- aGCGG---------CGGCGgCUGCUCCug-CGCCGc -5'
7703 3' -64.4 NC_001973.1 + 62680 0.76 0.162652
Target:  5'- aCGCCGCgCGCuacCGACGAGG--GCGGCGa -3'
miRNA:   3'- aGCGGCG-GCG---GCUGCUCCugCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 36317 0.75 0.166538
Target:  5'- gCGCCGCgGCCGACGcGGccgACGCGGg- -3'
miRNA:   3'- aGCGGCGgCGGCUGCuCC---UGCGCCgc -5'
7703 3' -64.4 NC_001973.1 + 124777 0.75 0.172119
Target:  5'- gCGCUcuguucgacuaucugGCCGCCGGCGAGGGcCGgGGCc -3'
miRNA:   3'- aGCGG---------------CGGCGGCUGCUCCU-GCgCCGc -5'
7703 3' -64.4 NC_001973.1 + 8628 0.75 0.174562
Target:  5'- aCGCCGCCgagGCCGACGAGaaacgccaacguGACGCuguucGGCGa -3'
miRNA:   3'- aGCGGCGG---CGGCUGCUC------------CUGCG-----CCGC- -5'
7703 3' -64.4 NC_001973.1 + 157713 0.74 0.196141
Target:  5'- cUUGCCgaacuuGCCGuuGACGAGGuggaGCGCGGUGc -3'
miRNA:   3'- -AGCGG------CGGCggCUGCUCC----UGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.