miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 3' -64.4 NC_001973.1 + 124331 0.66 0.558148
Target:  5'- -aGCUGCaCGCCGAC---GugGCGGCc -3'
miRNA:   3'- agCGGCG-GCGGCUGcucCugCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 23559 0.66 0.558148
Target:  5'- cUCGaCCGCaGCCGGcCGGcGGACGCGcCGc -3'
miRNA:   3'- -AGC-GGCGgCGGCU-GCU-CCUGCGCcGC- -5'
7703 3' -64.4 NC_001973.1 + 23719 0.66 0.558148
Target:  5'- -aGCCGCugggcuCGCUGACGGGccCGaCGGCGa -3'
miRNA:   3'- agCGGCG------GCGGCUGCUCcuGC-GCCGC- -5'
7703 3' -64.4 NC_001973.1 + 51657 0.66 0.558148
Target:  5'- gCGaCCGCCGagGACGcGGAgGCGcGCGc -3'
miRNA:   3'- aGC-GGCGGCggCUGCuCCUgCGC-CGC- -5'
7703 3' -64.4 NC_001973.1 + 59877 0.66 0.558148
Target:  5'- aCGCgCGCgGCCccaACGGcGGCGCGGUGu -3'
miRNA:   3'- aGCG-GCGgCGGc--UGCUcCUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 82907 0.66 0.558148
Target:  5'- gCGCCGCCGCgccCGACc--GACGCguucGGCGc -3'
miRNA:   3'- aGCGGCGGCG---GCUGcucCUGCG----CCGC- -5'
7703 3' -64.4 NC_001973.1 + 109146 0.66 0.558148
Target:  5'- gCGCCGCC-UCGACGAGc-CG-GGCGa -3'
miRNA:   3'- aGCGGCGGcGGCUGCUCcuGCgCCGC- -5'
7703 3' -64.4 NC_001973.1 + 159012 0.66 0.558148
Target:  5'- aUGUCGuCCGCCGAagaGAGcGACGCGa-- -3'
miRNA:   3'- aGCGGC-GGCGGCUg--CUC-CUGCGCcgc -5'
7703 3' -64.4 NC_001973.1 + 87243 0.67 0.548835
Target:  5'- aUGCCGCaCGCguUGACGuucugccGGACGCGGa- -3'
miRNA:   3'- aGCGGCG-GCG--GCUGCu------CCUGCGCCgc -5'
7703 3' -64.4 NC_001973.1 + 123999 0.67 0.548835
Target:  5'- aCGUCGCgGCCuGAccaguCGGGcGACGCGcGCGc -3'
miRNA:   3'- aGCGGCGgCGG-CU-----GCUC-CUGCGC-CGC- -5'
7703 3' -64.4 NC_001973.1 + 103859 0.67 0.548835
Target:  5'- -aGUCgGCCGCCGAgGAGaucgUGCGGCa -3'
miRNA:   3'- agCGG-CGGCGGCUgCUCcu--GCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 52718 0.67 0.548835
Target:  5'- -aGCCGCCGCagcuCGAGcGCcagGCGGCGc -3'
miRNA:   3'- agCGGCGGCGgcu-GCUCcUG---CGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 140423 0.67 0.54327
Target:  5'- uUCGUCGCgagcuacuuucgacuCGCCGGCGAGGAgCGCu--- -3'
miRNA:   3'- -AGCGGCG---------------GCGGCUGCUCCU-GCGccgc -5'
7703 3' -64.4 NC_001973.1 + 37745 0.67 0.54327
Target:  5'- aCGCUGCuCGCCuGGCGgcggcaguguagaucGGGgggcgccgccGCGCGGCGc -3'
miRNA:   3'- aGCGGCG-GCGG-CUGC---------------UCC----------UGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 146651 0.67 0.54327
Target:  5'- cUGCCGCCcacccuguugagcgcGCUcACGAGGuccuggaccaGCGUGGCGg -3'
miRNA:   3'- aGCGGCGG---------------CGGcUGCUCC----------UGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 121526 0.67 0.53957
Target:  5'- aCGCCGCCagcuuGCCcaccacCGAGcGGCGuCGGCGc -3'
miRNA:   3'- aGCGGCGG-----CGGcu----GCUC-CUGC-GCCGC- -5'
7703 3' -64.4 NC_001973.1 + 13880 0.67 0.53957
Target:  5'- -aGUCGCCGCCGACGaAGaGCGUGa-- -3'
miRNA:   3'- agCGGCGGCGGCUGC-UCcUGCGCcgc -5'
7703 3' -64.4 NC_001973.1 + 120757 0.67 0.535879
Target:  5'- -aGCCGCCgacguguuccgcaaGCUGAccggcuuCGAGGGCGUGcGCGc -3'
miRNA:   3'- agCGGCGG--------------CGGCU-------GCUCCUGCGC-CGC- -5'
7703 3' -64.4 NC_001973.1 + 68619 0.67 0.534037
Target:  5'- -gGCCGaCCaGCUGACGcAaugggccagagacucGGACGCGGCc -3'
miRNA:   3'- agCGGC-GG-CGGCUGC-U---------------CCUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 134795 0.67 0.53036
Target:  5'- aUGCgGCCGUCGGCGuGG-UGCcGCGa -3'
miRNA:   3'- aGCGgCGGCGGCUGCuCCuGCGcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.