miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 3' -64.4 NC_001973.1 + 1218 0.72 0.262747
Target:  5'- gUCGCCGCCGCCGcCGccgcccaAGGcuccGCGCaaGGCGc -3'
miRNA:   3'- -AGCGGCGGCGGCuGC-------UCC----UGCG--CCGC- -5'
7703 3' -64.4 NC_001973.1 + 3541 0.67 0.508498
Target:  5'- gUCGCUGUagcccaugagguaGCCGGCG-GGGCGC-GCGa -3'
miRNA:   3'- -AGCGGCGg------------CGGCUGCuCCUGCGcCGC- -5'
7703 3' -64.4 NC_001973.1 + 3738 0.66 0.595793
Target:  5'- -gGCCGUacaCGCCGACGGGcACGU-GCGa -3'
miRNA:   3'- agCGGCG---GCGGCUGCUCcUGCGcCGC- -5'
7703 3' -64.4 NC_001973.1 + 3989 0.73 0.234969
Target:  5'- -aGCCGCaCGCCGGauaGGGGACGCGcuugaacGCGc -3'
miRNA:   3'- agCGGCG-GCGGCUg--CUCCUGCGC-------CGC- -5'
7703 3' -64.4 NC_001973.1 + 5544 0.76 0.151478
Target:  5'- aCGCCGCCGUuggaGACGuGGGAccguuCGCGGCGa -3'
miRNA:   3'- aGCGGCGGCGg---CUGC-UCCU-----GCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 5779 0.68 0.494137
Target:  5'- gCGUCGCCGUgGACGAaauaaacgcGGAgGCGaGCc -3'
miRNA:   3'- aGCGGCGGCGgCUGCU---------CCUgCGC-CGc -5'
7703 3' -64.4 NC_001973.1 + 5933 0.67 0.512116
Target:  5'- -gGUCGCgCGCaCGAUGcGcGACGCGGCc -3'
miRNA:   3'- agCGGCG-GCG-GCUGCuC-CUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 6129 0.67 0.512116
Target:  5'- gCGCCGCgauaCGCCGcCu-GGACGgCGGCa -3'
miRNA:   3'- aGCGGCG----GCGGCuGcuCCUGC-GCCGc -5'
7703 3' -64.4 NC_001973.1 + 7574 0.68 0.485256
Target:  5'- cUCGCC-UCGCUGACGAccGGCGCGcGCa -3'
miRNA:   3'- -AGCGGcGGCGGCUGCUc-CUGCGC-CGc -5'
7703 3' -64.4 NC_001973.1 + 7718 0.68 0.484372
Target:  5'- gCGCCGcCCGCCcgacuGACGcuGGAgcaccggUGCGGCGc -3'
miRNA:   3'- aGCGGC-GGCGG-----CUGCu-CCU-------GCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 8628 0.75 0.174562
Target:  5'- aCGCCGCCgagGCCGACGAGaaacgccaacguGACGCuguucGGCGa -3'
miRNA:   3'- aGCGGCGG---CGGCUGCUC------------CUGCG-----CCGC- -5'
7703 3' -64.4 NC_001973.1 + 8833 0.68 0.459087
Target:  5'- cCGcCCGCCGuCCcGCGcugcuGGCGCGGCGa -3'
miRNA:   3'- aGC-GGCGGC-GGcUGCuc---CUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 9630 0.8 0.084501
Target:  5'- aUCGCCGCUGgCGuucggcuCGAGGGCGCGGUa -3'
miRNA:   3'- -AGCGGCGGCgGCu------GCUCCUGCGCCGc -5'
7703 3' -64.4 NC_001973.1 + 13880 0.67 0.53957
Target:  5'- -aGUCGCCGCCGACGaAGaGCGUGa-- -3'
miRNA:   3'- agCGGCGGCGGCUGC-UCcUGCGCcgc -5'
7703 3' -64.4 NC_001973.1 + 14360 0.79 0.095594
Target:  5'- gUCGgCGUgGUCGACG-GGGCGCGGCGa -3'
miRNA:   3'- -AGCgGCGgCGGCUGCuCCUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 18266 0.66 0.595793
Target:  5'- gUCGgCGCacacgGCCGACGAGGGCacCaGCGc -3'
miRNA:   3'- -AGCgGCGg----CGGCUGCUCCUGc-GcCGC- -5'
7703 3' -64.4 NC_001973.1 + 21695 0.67 0.53036
Target:  5'- gCGCCGCCGUCGGCu-GGucgaagugaaccGCGCcgcuGGCGu -3'
miRNA:   3'- aGCGGCGGCGGCUGcuCC------------UGCG----CCGC- -5'
7703 3' -64.4 NC_001973.1 + 22738 0.66 0.585389
Target:  5'- -aGCCGCgGCCGuaucuguGCGAGG--GgGGCGa -3'
miRNA:   3'- agCGGCGgCGGC-------UGCUCCugCgCCGC- -5'
7703 3' -64.4 NC_001973.1 + 22994 0.71 0.336643
Target:  5'- aCGCCGaCGCCGACGuGcaaaagaucuuggccGACGUGGUGu -3'
miRNA:   3'- aGCGGCgGCGGCUGCuC---------------CUGCGCCGC- -5'
7703 3' -64.4 NC_001973.1 + 23200 0.68 0.442064
Target:  5'- aUGaCGCgCGCCGACGAGcGCGCaguGGCGc -3'
miRNA:   3'- aGCgGCG-GCGGCUGCUCcUGCG---CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.