miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 5' -54.6 NC_001973.1 + 117808 0.66 0.958292
Target:  5'- -cCGGCcUGUUCcUGAUCGuGCaGCCGg -3'
miRNA:   3'- auGCCGuGCAAGuACUAGC-UGcCGGC- -5'
7703 5' -54.6 NC_001973.1 + 121305 0.66 0.958292
Target:  5'- cGCGGCGCGcgCcgGcg-GACGcGCCGa -3'
miRNA:   3'- aUGCCGUGCaaGuaCuagCUGC-CGGC- -5'
7703 5' -54.6 NC_001973.1 + 130325 0.66 0.954873
Target:  5'- -uCGGCACGgcgcugccaaagaaaUCGUcGAUCGA-GGCCGc -3'
miRNA:   3'- auGCCGUGCa--------------AGUA-CUAGCUgCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 35672 0.66 0.950443
Target:  5'- cACGGCGCGgcc--GA-CGGCGGCgCGg -3'
miRNA:   3'- aUGCCGUGCaaguaCUaGCUGCCG-GC- -5'
7703 5' -54.6 NC_001973.1 + 111938 0.66 0.946172
Target:  5'- cGCGGCgGCGacUUCuccGAccCGGCGGCCGa -3'
miRNA:   3'- aUGCCG-UGC--AAGua-CUa-GCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 31436 0.66 0.946172
Target:  5'- -cCGGCuCGUUCA-GAUUGcUGGCCa -3'
miRNA:   3'- auGCCGuGCAAGUaCUAGCuGCCGGc -5'
7703 5' -54.6 NC_001973.1 + 152436 0.66 0.946172
Target:  5'- gGCGGCGCGcaggcUUAUcGcgCGGCGGCUu -3'
miRNA:   3'- aUGCCGUGCa----AGUA-CuaGCUGCCGGc -5'
7703 5' -54.6 NC_001973.1 + 95818 0.66 0.946172
Target:  5'- gACGGCAaccCGUUCAcGGgcgcggCGACGGgcCCGg -3'
miRNA:   3'- aUGCCGU---GCAAGUaCUa-----GCUGCC--GGC- -5'
7703 5' -54.6 NC_001973.1 + 87360 0.66 0.941666
Target:  5'- aGCaGCACGg-CGUGGUUGA-GGCCGu -3'
miRNA:   3'- aUGcCGUGCaaGUACUAGCUgCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 31096 0.66 0.941666
Target:  5'- gAgGGCGCGUUgGUGAuguuguggugcuUCG-CGGUCGu -3'
miRNA:   3'- aUgCCGUGCAAgUACU------------AGCuGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 125636 0.66 0.941666
Target:  5'- uUugGGCGggcCGUUCG-GGUCGA-GGCCu -3'
miRNA:   3'- -AugCCGU---GCAAGUaCUAGCUgCCGGc -5'
7703 5' -54.6 NC_001973.1 + 16959 0.66 0.939797
Target:  5'- aGCGGC-CGUgcccgaguuuuUGGUCGugGCGGCCGc -3'
miRNA:   3'- aUGCCGuGCAagu--------ACUAGC--UGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 5930 0.67 0.936922
Target:  5'- cGCGGuCGCGcgCAcgaUGcgCGacGCGGCCGg -3'
miRNA:   3'- aUGCC-GUGCaaGU---ACuaGC--UGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 137201 0.67 0.931938
Target:  5'- cGCGGCGCGagUCGcg--CGGCGGCgCGu -3'
miRNA:   3'- aUGCCGUGCa-AGUacuaGCUGCCG-GC- -5'
7703 5' -54.6 NC_001973.1 + 72805 0.67 0.931938
Target:  5'- gGCGuaCGCGUUCAcGAUguugacgaggcCGGCGGCCGc -3'
miRNA:   3'- aUGCc-GUGCAAGUaCUA-----------GCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 43906 0.67 0.926179
Target:  5'- aUAUGGCGCGaaacugCccGAaaagaagacgcccUCGACGGCCGc -3'
miRNA:   3'- -AUGCCGUGCaa----GuaCU-------------AGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 69684 0.67 0.915547
Target:  5'- cGCGGuCGCGUgcagacggUCgAUGcauUCGAUGGCCGc -3'
miRNA:   3'- aUGCC-GUGCA--------AG-UACu--AGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 133948 0.67 0.909604
Target:  5'- cGCgGGCugGg-CGUacUCGACGGCCGu -3'
miRNA:   3'- aUG-CCGugCaaGUAcuAGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 3565 0.67 0.909604
Target:  5'- gGCGGgGCGcgCgAUGAcCGACGGCgCGc -3'
miRNA:   3'- aUGCCgUGCaaG-UACUaGCUGCCG-GC- -5'
7703 5' -54.6 NC_001973.1 + 26174 0.68 0.903424
Target:  5'- -cCGGCGCGggCGc-GUCGACGGCg- -3'
miRNA:   3'- auGCCGUGCaaGUacUAGCUGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.