miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7703 5' -54.6 NC_001973.1 + 119407 0.68 0.896354
Target:  5'- aACGGgcgucgaCGCGUUucgcgaCAUGcUCGACGGCCa -3'
miRNA:   3'- aUGCC-------GUGCAA------GUACuAGCUGCCGGc -5'
7703 5' -54.6 NC_001973.1 + 103938 0.69 0.869066
Target:  5'- cGCGGCGCGgggCGUGccGUCG-CGGCg- -3'
miRNA:   3'- aUGCCGUGCaa-GUAC--UAGCuGCCGgc -5'
7703 5' -54.6 NC_001973.1 + 6512 0.69 0.869066
Target:  5'- gGCGGCGCGggCGUGccgaCGauuuuGCGGCUGg -3'
miRNA:   3'- aUGCCGUGCaaGUACua--GC-----UGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 104146 0.69 0.861533
Target:  5'- gACGaGCACGaggCGgugGAUCGGgcCGGCCGa -3'
miRNA:   3'- aUGC-CGUGCaa-GUa--CUAGCU--GCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 28941 0.69 0.861533
Target:  5'- cGCGGCugGggCGgcagCGGgGGCCGg -3'
miRNA:   3'- aUGCCGugCaaGUacuaGCUgCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 157882 0.69 0.853791
Target:  5'- cUGCGGCuCGUgUCGgaGGUCG-CGGCCGc -3'
miRNA:   3'- -AUGCCGuGCA-AGUa-CUAGCuGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 86430 0.69 0.845848
Target:  5'- gGCGGCuuACG-UCAgcGA-CGACGGCCGc -3'
miRNA:   3'- aUGCCG--UGCaAGUa-CUaGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 110341 0.69 0.83771
Target:  5'- uUGCuGGaCGCGUUCGccgccUCGGCGGCCGc -3'
miRNA:   3'- -AUG-CC-GUGCAAGUacu--AGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 96899 0.69 0.83771
Target:  5'- gGCgGGCGCG-UCG-GAUCGuucuCGGCCGu -3'
miRNA:   3'- aUG-CCGUGCaAGUaCUAGCu---GCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 105364 0.69 0.829383
Target:  5'- aGCGGCGCGgaggc-GUCGGCGGCUu -3'
miRNA:   3'- aUGCCGUGCaaguacUAGCUGCCGGc -5'
7703 5' -54.6 NC_001973.1 + 107521 0.69 0.829383
Target:  5'- aACGGCGCGcgagacaAUGAUCGugGGgCu -3'
miRNA:   3'- aUGCCGUGCaag----UACUAGCugCCgGc -5'
7703 5' -54.6 NC_001973.1 + 111667 0.7 0.820876
Target:  5'- gGCuGCGCGggCAgcgGAUCGAgCGGCUGc -3'
miRNA:   3'- aUGcCGUGCaaGUa--CUAGCU-GCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 53865 0.7 0.820876
Target:  5'- gGCGGCGCcgcCGaGcgCGGCGGCCGu -3'
miRNA:   3'- aUGCCGUGcaaGUaCuaGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 87104 0.7 0.820016
Target:  5'- -cCGGCACGUgugcgCGUGcgCGGCGugcgcgcGCCGg -3'
miRNA:   3'- auGCCGUGCAa----GUACuaGCUGC-------CGGC- -5'
7703 5' -54.6 NC_001973.1 + 121346 0.7 0.812197
Target:  5'- gGCGGuCGCGgUCGUGcgCGACcucgaccaucugGGCCGa -3'
miRNA:   3'- aUGCC-GUGCaAGUACuaGCUG------------CCGGC- -5'
7703 5' -54.6 NC_001973.1 + 62609 0.7 0.803353
Target:  5'- aGCGaCGCG-UCGUGGUCGACGcgcgcGCCGa -3'
miRNA:   3'- aUGCcGUGCaAGUACUAGCUGC-----CGGC- -5'
7703 5' -54.6 NC_001973.1 + 52740 0.7 0.803353
Target:  5'- gGCGGCGCGUcUCGUcGUCGucgcccuugaguAUGGCCGc -3'
miRNA:   3'- aUGCCGUGCA-AGUAcUAGC------------UGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 14538 0.71 0.775921
Target:  5'- cGCGaucaaACGUUCGU--UCGACGGCCGg -3'
miRNA:   3'- aUGCcg---UGCAAGUAcuAGCUGCCGGC- -5'
7703 5' -54.6 NC_001973.1 + 120333 0.71 0.744412
Target:  5'- gACGGCGCGgccgCAUcgcgauucaaacgcGAUCuGGCGGCCa -3'
miRNA:   3'- aUGCCGUGCaa--GUA--------------CUAG-CUGCCGGc -5'
7703 5' -54.6 NC_001973.1 + 8163 0.71 0.737578
Target:  5'- aACGGCACcgUCGgcgGGUCGACGGaCGa -3'
miRNA:   3'- aUGCCGUGcaAGUa--CUAGCUGCCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.