miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7704 3' -54.3 NC_001973.1 + 10192 0.66 0.962052
Target:  5'- aGCCG-UCGcGGCAcGGCGcccUGUGGAAg -3'
miRNA:   3'- -UGGCaAGCuUCGU-CCGCu--GCACCUUg -5'
7704 3' -54.3 NC_001973.1 + 135910 0.66 0.958462
Target:  5'- gGCCGgacgaucgUCGcaGAGCGGGCGcgGCGaUGGcGCg -3'
miRNA:   3'- -UGGCa-------AGC--UUCGUCCGC--UGC-ACCuUG- -5'
7704 3' -54.3 NC_001973.1 + 108091 0.66 0.958462
Target:  5'- cCCGcgCGcAGCGucaacaacauGGUGugGUGGGGCu -3'
miRNA:   3'- uGGCaaGCuUCGU----------CCGCugCACCUUG- -5'
7704 3' -54.3 NC_001973.1 + 24092 0.66 0.958462
Target:  5'- cACCGcgaCGAGGUcgacGGCGACGUGucGCu -3'
miRNA:   3'- -UGGCaa-GCUUCGu---CCGCUGCACcuUG- -5'
7704 3' -54.3 NC_001973.1 + 56532 0.66 0.950599
Target:  5'- aGCuCGggCGggGCGGGCucGGCGccGAGCu -3'
miRNA:   3'- -UG-GCaaGCuuCGUCCG--CUGCacCUUG- -5'
7704 3' -54.3 NC_001973.1 + 95364 0.66 0.950599
Target:  5'- aGCUGUUCGAcGGCcuG-GACGUGGAc- -3'
miRNA:   3'- -UGGCAAGCU-UCGucCgCUGCACCUug -5'
7704 3' -54.3 NC_001973.1 + 7894 0.66 0.945876
Target:  5'- cGCCGgcgCGuuGCAGGCGuucuguuGCGaggcGGAGCg -3'
miRNA:   3'- -UGGCaa-GCuuCGUCCGC-------UGCa---CCUUG- -5'
7704 3' -54.3 NC_001973.1 + 82186 0.67 0.941799
Target:  5'- aGCCG-UCGAGGCAGuucuugucGCGcuuuuCGUcGGAGCg -3'
miRNA:   3'- -UGGCaAGCUUCGUC--------CGCu----GCA-CCUUG- -5'
7704 3' -54.3 NC_001973.1 + 7745 0.67 0.941799
Target:  5'- cACCGgugCGgcGCGaaccgcggcggcGGCGGCGUcgaGGAGCu -3'
miRNA:   3'- -UGGCaa-GCuuCGU------------CCGCUGCA---CCUUG- -5'
7704 3' -54.3 NC_001973.1 + 123268 0.67 0.932042
Target:  5'- gACCGUUCGGcgguacaggccgGGCAGGCG-CGgccAGCg -3'
miRNA:   3'- -UGGCAAGCU------------UCGUCCGCuGCaccUUG- -5'
7704 3' -54.3 NC_001973.1 + 93734 0.67 0.921316
Target:  5'- uACCGcgaCGAGGCGagccgcccGGCGACcaGGAGCg -3'
miRNA:   3'- -UGGCaa-GCUUCGU--------CCGCUGcaCCUUG- -5'
7704 3' -54.3 NC_001973.1 + 95398 0.67 0.919623
Target:  5'- uCCGggCGGcaagGGCgccaacccgcugcuGGGCGACGcGGAGCg -3'
miRNA:   3'- uGGCaaGCU----UCG--------------UCCGCUGCaCCUUG- -5'
7704 3' -54.3 NC_001973.1 + 83947 0.68 0.896972
Target:  5'- cGCCGcUCgGAGGCGGGCG-CGUcgaGGcAGCa -3'
miRNA:   3'- -UGGCaAG-CUUCGUCCGCuGCA---CC-UUG- -5'
7704 3' -54.3 NC_001973.1 + 146760 0.68 0.883386
Target:  5'- cCCGUUC-AAGCGGGCGugcaaGCG-GGGAUu -3'
miRNA:   3'- uGGCAAGcUUCGUCCGC-----UGCaCCUUG- -5'
7704 3' -54.3 NC_001973.1 + 101193 0.68 0.883386
Target:  5'- cGCCGggCGAAauuggcgcGCGGGCGGCGcuucUGGucGCg -3'
miRNA:   3'- -UGGCaaGCUU--------CGUCCGCUGC----ACCu-UG- -5'
7704 3' -54.3 NC_001973.1 + 144714 0.69 0.876252
Target:  5'- cGCCGUcCGAGGacaucgagcgcCAGGCGGCGgcGGAGg -3'
miRNA:   3'- -UGGCAaGCUUC-----------GUCCGCUGCa-CCUUg -5'
7704 3' -54.3 NC_001973.1 + 61104 0.69 0.868897
Target:  5'- gGCCGa-CGGAGCAgcGGCGGCGgGGcGCg -3'
miRNA:   3'- -UGGCaaGCUUCGU--CCGCUGCaCCuUG- -5'
7704 3' -54.3 NC_001973.1 + 132423 0.69 0.861326
Target:  5'- gAUCGagagCGAGGCGaGCGugGUGGAGg -3'
miRNA:   3'- -UGGCaa--GCUUCGUcCGCugCACCUUg -5'
7704 3' -54.3 NC_001973.1 + 152378 0.69 0.861326
Target:  5'- aGCCGgacggcCGgcGCGGGCGgGCGcGGGGCg -3'
miRNA:   3'- -UGGCaa----GCuuCGUCCGC-UGCaCCUUG- -5'
7704 3' -54.3 NC_001973.1 + 121545 0.69 0.845561
Target:  5'- cACCGagCGGcgucGGCGcGUGugGUGGAACa -3'
miRNA:   3'- -UGGCaaGCU----UCGUcCGCugCACCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.