miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7704 5' -57.4 NC_001973.1 + 17837 0.66 0.880361
Target:  5'- -cGUcGAGGGUgGCGUGC-CCGuCGa -3'
miRNA:   3'- ucCAaCUCCCAgCGCACGaGGCuGUg -5'
7704 5' -57.4 NC_001973.1 + 45212 0.66 0.86597
Target:  5'- cGGGcgcgaUGcGGGcCGCGUGCUgCCGGCcCg -3'
miRNA:   3'- -UCCa----ACuCCCaGCGCACGA-GGCUGuG- -5'
7704 5' -57.4 NC_001973.1 + 34107 0.66 0.858464
Target:  5'- ----aGAGGucGUCGCGUuggcGCUCCaGACACu -3'
miRNA:   3'- uccaaCUCC--CAGCGCA----CGAGG-CUGUG- -5'
7704 5' -57.4 NC_001973.1 + 109312 0.66 0.856938
Target:  5'- gGGGUcGAGGagcgcGUCGCGcGCgaaccggaacagCCGGCGCa -3'
miRNA:   3'- -UCCAaCUCC-----CAGCGCaCGa-----------GGCUGUG- -5'
7704 5' -57.4 NC_001973.1 + 93578 0.67 0.818067
Target:  5'- gAGG-UGAGcGGUCGCGUaguGC-CCG-CGCu -3'
miRNA:   3'- -UCCaACUC-CCAGCGCA---CGaGGCuGUG- -5'
7704 5' -57.4 NC_001973.1 + 69675 0.68 0.754836
Target:  5'- gAGGUcGGGcgcGGUCGCGUGCagacggUCGAUGCa -3'
miRNA:   3'- -UCCAaCUC---CCAGCGCACGa-----GGCUGUG- -5'
7704 5' -57.4 NC_001973.1 + 101551 0.68 0.754836
Target:  5'- -uGUUGGGGuGgCGCGUGgUCCaGGCGCg -3'
miRNA:   3'- ucCAACUCC-CaGCGCACgAGG-CUGUG- -5'
7704 5' -57.4 NC_001973.1 + 122607 0.68 0.735688
Target:  5'- cGGcgGAGGcGUCgGCG-GCgCCGACGCg -3'
miRNA:   3'- uCCaaCUCC-CAG-CGCaCGaGGCUGUG- -5'
7704 5' -57.4 NC_001973.1 + 98781 0.69 0.706329
Target:  5'- uGGUgaaacGAGGacaUCGUGUGC-CCGGCGCg -3'
miRNA:   3'- uCCAa----CUCCc--AGCGCACGaGGCUGUG- -5'
7704 5' -57.4 NC_001973.1 + 85260 0.73 0.487915
Target:  5'- uGGa-GAGGGgCGCGUGCUCC-ACGCu -3'
miRNA:   3'- uCCaaCUCCCaGCGCACGAGGcUGUG- -5'
7704 5' -57.4 NC_001973.1 + 24736 0.73 0.487915
Target:  5'- ----gGAGGuGcUCGCGUGCUCCGuGCACg -3'
miRNA:   3'- uccaaCUCC-C-AGCGCACGAGGC-UGUG- -5'
7704 5' -57.4 NC_001973.1 + 107872 0.75 0.357972
Target:  5'- cGGUUGAacGGGUCGCGccgGCcguuggCCGACGCc -3'
miRNA:   3'- uCCAACU--CCCAGCGCa--CGa-----GGCUGUG- -5'
7704 5' -57.4 NC_001973.1 + 107955 1.1 0.001916
Target:  5'- gAGGUUGAGGGUCGCGUGCUCCGACACg -3'
miRNA:   3'- -UCCAACUCCCAGCGCACGAGGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.