miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7706 5' -54.4 NC_001973.1 + 32419 0.68 0.904464
Target:  5'- cGGCgaacACGUUGCCGuccugcGA-GAAuUGGCGCGu -3'
miRNA:   3'- -CCG----UGCGACGGU------CUaCUUuACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 16001 0.68 0.898036
Target:  5'- --aGCGC-GCCGGAcGAccGAUGGCGCc -3'
miRNA:   3'- ccgUGCGaCGGUCUaCU--UUACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 95847 0.68 0.884475
Target:  5'- gGGCcCGgUGCCGGGcacgUGGGAggacGGCGUGg -3'
miRNA:   3'- -CCGuGCgACGGUCU----ACUUUa---CCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 5859 0.68 0.87735
Target:  5'- cGCACGC-GCCGGcgucucGAGAggcUGGUGCGg -3'
miRNA:   3'- cCGUGCGaCGGUCua----CUUU---ACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 123516 0.69 0.862434
Target:  5'- cGGCGCGCUcGCCGGcgc-AGUGcaGCGCGu -3'
miRNA:   3'- -CCGUGCGA-CGGUCuacuUUAC--CGCGC- -5'
7706 5' -54.4 NC_001973.1 + 41777 0.69 0.862434
Target:  5'- aGC-CGCUGCCcgAGAacGGcgGGCGCGa -3'
miRNA:   3'- cCGuGCGACGG--UCUacUUuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 21728 0.69 0.854655
Target:  5'- cGCugGCgucGCCGGAcaaGAcgcauAUGGCGCGc -3'
miRNA:   3'- cCGugCGa--CGGUCUa--CUu----UACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 135899 0.69 0.854655
Target:  5'- cGGCGguCGCggGCCGGAcgaucgucgcaGAGcgGGCGCGg -3'
miRNA:   3'- -CCGU--GCGa-CGGUCUa----------CUUuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 95716 0.69 0.854655
Target:  5'- cGGCGCGgUgcGCCGGcUGu--UGGCGCa -3'
miRNA:   3'- -CCGUGCgA--CGGUCuACuuuACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 46216 0.69 0.84667
Target:  5'- cGCGCGCgacgGCCGGGUcauGUGcGCGCu -3'
miRNA:   3'- cCGUGCGa---CGGUCUAcuuUAC-CGCGc -5'
7706 5' -54.4 NC_001973.1 + 31098 0.69 0.830111
Target:  5'- gGGCGCGUUGgu-GAUGuuGUGGUGCu -3'
miRNA:   3'- -CCGUGCGACgguCUACuuUACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 105698 0.71 0.763932
Target:  5'- cGGCACGCUGaacaCGGAgaccgccugcaGGCGCGg -3'
miRNA:   3'- -CCGUGCGACg---GUCUacuuua-----CCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 111265 0.71 0.755259
Target:  5'- cGGaCGCGCUGCCcgugggcaacucGGUGGuGGUGGCGCc -3'
miRNA:   3'- -CC-GUGCGACGGu-----------CUACU-UUACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 101188 0.72 0.707656
Target:  5'- -cCACGC-GCCGGgcGAAAuUGGCGCGc -3'
miRNA:   3'- ccGUGCGaCGGUCuaCUUU-ACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 69059 0.72 0.678098
Target:  5'- cGGCACGCUGCacgccaccGUGGCGCu -3'
miRNA:   3'- -CCGUGCGACGgucuacuuUACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 83942 0.72 0.666789
Target:  5'- cGGCGCGCcGCuCGGA--GGcgGGCGCGu -3'
miRNA:   3'- -CCGUGCGaCG-GUCUacUUuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 107303 0.73 0.656478
Target:  5'- cGCACGCguuggGCCcGAUGc--UGGCGCGc -3'
miRNA:   3'- cCGUGCGa----CGGuCUACuuuACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 39403 0.73 0.625461
Target:  5'- cGGCGCGCgccaggucgGCCGcGGUGA---GGCGCGu -3'
miRNA:   3'- -CCGUGCGa--------CGGU-CUACUuuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 59040 0.73 0.624426
Target:  5'- cGGCACGCUGaCCccguucgAGGUGGA--GGUGCGc -3'
miRNA:   3'- -CCGUGCGAC-GG-------UCUACUUuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 144246 0.74 0.573968
Target:  5'- uGCGCGCUGgCGGAcGAg--GGCGCGu -3'
miRNA:   3'- cCGUGCGACgGUCUaCUuuaCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.