miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7707 5' -50.7 NC_001973.1 + 44971 0.66 0.996498
Target:  5'- -uUGGGCCGCaCGUCcgggugcGCGUAGuucaccuugGUGCa -3'
miRNA:   3'- gcACCUGGCG-GCAGuu-----CGCAUU---------UAUG- -5'
7707 5' -50.7 NC_001973.1 + 31265 0.66 0.995892
Target:  5'- gGUGGAacaUGCCG-CcGGCGU-GGUACa -3'
miRNA:   3'- gCACCUg--GCGGCaGuUCGCAuUUAUG- -5'
7707 5' -50.7 NC_001973.1 + 158030 0.66 0.995892
Target:  5'- uGUGcGCCGCCGcCGcgcccguGCGUAGcgACg -3'
miRNA:   3'- gCACcUGGCGGCaGUu------CGCAUUuaUG- -5'
7707 5' -50.7 NC_001973.1 + 150196 0.66 0.995694
Target:  5'- aGUGGGCCGCgGcUCGgccucggcuugcugGGCGgccuccaAGAUACa -3'
miRNA:   3'- gCACCUGGCGgC-AGU--------------UCGCa------UUUAUG- -5'
7707 5' -50.7 NC_001973.1 + 109451 0.66 0.995202
Target:  5'- -cUGG-CCGCguucagGUCGAGCGUGGcgACg -3'
miRNA:   3'- gcACCuGGCGg-----CAGUUCGCAUUuaUG- -5'
7707 5' -50.7 NC_001973.1 + 26158 0.66 0.993539
Target:  5'- gCGUGGGCCaguuccGCCGgcgCGGGCGcgucGAcgGCg -3'
miRNA:   3'- -GCACCUGG------CGGCa--GUUCGCa---UUuaUG- -5'
7707 5' -50.7 NC_001973.1 + 30483 0.67 0.99255
Target:  5'- gCGUGG-CCGCaGUCGGGCacgacGGUGCg -3'
miRNA:   3'- -GCACCuGGCGgCAGUUCGcau--UUAUG- -5'
7707 5' -50.7 NC_001973.1 + 30364 0.67 0.991444
Target:  5'- --cGGGCCGCCGgcgcGGCGacucGGGUGCg -3'
miRNA:   3'- gcaCCUGGCGGCagu-UCGCa---UUUAUG- -5'
7707 5' -50.7 NC_001973.1 + 158094 0.67 0.990213
Target:  5'- gGUGGACCGCCucUCGGGCc------- -3'
miRNA:   3'- gCACCUGGCGGc-AGUUCGcauuuaug -5'
7707 5' -50.7 NC_001973.1 + 97872 0.67 0.990213
Target:  5'- --gGGGCCGUCGU-GGGCGUAGcagucgcccuucAUGCa -3'
miRNA:   3'- gcaCCUGGCGGCAgUUCGCAUU------------UAUG- -5'
7707 5' -50.7 NC_001973.1 + 37094 0.67 0.988846
Target:  5'- --aGGACCGCCGcCGAGCc------- -3'
miRNA:   3'- gcaCCUGGCGGCaGUUCGcauuuaug -5'
7707 5' -50.7 NC_001973.1 + 55334 0.67 0.987335
Target:  5'- uCG-GGugCGCCGUCAGcGCGg------ -3'
miRNA:   3'- -GCaCCugGCGGCAGUU-CGCauuuaug -5'
7707 5' -50.7 NC_001973.1 + 111085 0.67 0.987335
Target:  5'- aCGUGGGCCGC-GUCGAGgagAGcgACg -3'
miRNA:   3'- -GCACCUGGCGgCAGUUCgcaUUuaUG- -5'
7707 5' -50.7 NC_001973.1 + 28957 0.68 0.985672
Target:  5'- gCGgGGGCCGgCaGUCGGGCGgcGAcGCg -3'
miRNA:   3'- -GCaCCUGGCgG-CAGUUCGCauUUaUG- -5'
7707 5' -50.7 NC_001973.1 + 17827 0.68 0.983846
Target:  5'- --aGcGACgCGCCGUCGAGgGUGGcGUGCc -3'
miRNA:   3'- gcaC-CUG-GCGGCAGUUCgCAUU-UAUG- -5'
7707 5' -50.7 NC_001973.1 + 94924 0.68 0.981849
Target:  5'- gGUGGugGCCGCCuacuucGUCGAGUGgggcguGUACg -3'
miRNA:   3'- gCACC--UGGCGG------CAGUUCGCauu---UAUG- -5'
7707 5' -50.7 NC_001973.1 + 110371 0.68 0.977307
Target:  5'- gCGUcGGACgGCgG-CAAGCGUAAAaagACg -3'
miRNA:   3'- -GCA-CCUGgCGgCaGUUCGCAUUUa--UG- -5'
7707 5' -50.7 NC_001973.1 + 57691 0.69 0.97198
Target:  5'- --cGGAUCGCCGgccUCGAGCGcGAAUcucGCg -3'
miRNA:   3'- gcaCCUGGCGGC---AGUUCGCaUUUA---UG- -5'
7707 5' -50.7 NC_001973.1 + 53314 0.69 0.962384
Target:  5'- -uUGGagGCCGUCGUCugcaGGGCGUcGAUGCg -3'
miRNA:   3'- gcACC--UGGCGGCAG----UUCGCAuUUAUG- -5'
7707 5' -50.7 NC_001973.1 + 7102 0.7 0.941715
Target:  5'- gCGcGcGACCGCCGUCGuGCucGAGUGCg -3'
miRNA:   3'- -GCaC-CUGGCGGCAGUuCGcaUUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.