miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7709 5' -53.3 NC_001973.1 + 146122 0.66 0.982261
Target:  5'- -aGCCGGcUCGGGAg---CG-GGCCGg -3'
miRNA:   3'- ccCGGCC-AGUUCUaaaaGCaCCGGCg -5'
7709 5' -53.3 NC_001973.1 + 134971 0.66 0.980176
Target:  5'- cGGGUCGGcgaUCGAGuacgucCG-GGCCGUc -3'
miRNA:   3'- -CCCGGCC---AGUUCuaaaa-GCaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 122550 0.66 0.980176
Target:  5'- cGGcGCUGGUgGugguGGUggUgGUGGCCGg -3'
miRNA:   3'- -CC-CGGCCAgUu---CUAaaAgCACCGGCg -5'
7709 5' -53.3 NC_001973.1 + 96759 0.66 0.979737
Target:  5'- -cGCCGG-CGAGucgggcggCGUGGCgGCc -3'
miRNA:   3'- ccCGGCCaGUUCuaaaa---GCACCGgCG- -5'
7709 5' -53.3 NC_001973.1 + 107030 0.66 0.977912
Target:  5'- -uGUCGGgCAAGAagcUCGcguUGGCCGCg -3'
miRNA:   3'- ccCGGCCaGUUCUaaaAGC---ACCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 16961 0.66 0.977912
Target:  5'- cGGCCGuGccCGAGuuuuuggUCGUGGCgGCc -3'
miRNA:   3'- cCCGGC-Ca-GUUCuaaa---AGCACCGgCG- -5'
7709 5' -53.3 NC_001973.1 + 57212 0.66 0.977912
Target:  5'- gGGGCC-GUCGAcGAcg-UCGaGGUCGCc -3'
miRNA:   3'- -CCCGGcCAGUU-CUaaaAGCaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 157885 0.66 0.972823
Target:  5'- cGGCuCGuGUC-GGAgg-UCGcGGCCGCc -3'
miRNA:   3'- cCCG-GC-CAGuUCUaaaAGCaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 61069 0.66 0.972823
Target:  5'- gGGGCgGGUaCAGGcgcagacCGggcaGGCCGCg -3'
miRNA:   3'- -CCCGgCCA-GUUCuaaaa--GCa---CCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 117487 0.67 0.966935
Target:  5'- aGGGCCGuaUCAuGAUggcuuUGGCCGCc -3'
miRNA:   3'- -CCCGGCc-AGUuCUAaaagcACCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 138739 0.67 0.966935
Target:  5'- cGGaagaCGGUCAacAGGUccUCGUccgugcacccGGCCGCg -3'
miRNA:   3'- cCCg---GCCAGU--UCUAaaAGCA----------CCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 146046 0.67 0.960199
Target:  5'- cGGGgCGaGUCuAAGGUUg----GGCCGCg -3'
miRNA:   3'- -CCCgGC-CAG-UUCUAAaagcaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 94916 0.67 0.956499
Target:  5'- --aCCGG-CAAGGUg---GUGGCCGCc -3'
miRNA:   3'- cccGGCCaGUUCUAaaagCACCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 104167 0.67 0.95417
Target:  5'- cGGGCCGGcCGAaaacgcaaGcGGCCGCu -3'
miRNA:   3'- -CCCGGCCaGUUcuaaaag-CaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 78437 0.67 0.952571
Target:  5'- aGGCCGGcgUgGAGAUggacc-GGCCGCg -3'
miRNA:   3'- cCCGGCC--AgUUCUAaaagcaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 74689 0.67 0.952571
Target:  5'- cGGGCaCGGgCGcGcaUUUCGcGGCCGCc -3'
miRNA:   3'- -CCCG-GCCaGUuCuaAAAGCaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 87539 0.68 0.938432
Target:  5'- cGGCCGGUgccgg---UCGaGGCCGCa -3'
miRNA:   3'- cCCGGCCAguucuaaaAGCaCCGGCG- -5'
7709 5' -53.3 NC_001973.1 + 34023 0.69 0.900234
Target:  5'- cGGcCCGGUCGAGGU--UCGUGuaCaGCa -3'
miRNA:   3'- cCC-GGCCAGUUCUAaaAGCACcgG-CG- -5'
7709 5' -53.3 NC_001973.1 + 44715 0.7 0.879905
Target:  5'- aGGuGCCGGgCAAGGUgaaCGUGuaCGCg -3'
miRNA:   3'- -CC-CGGCCaGUUCUAaaaGCACcgGCG- -5'
7709 5' -53.3 NC_001973.1 + 111471 0.7 0.865232
Target:  5'- aGGCCGcgcGUCAAG---UUCGUcGCCGCg -3'
miRNA:   3'- cCCGGC---CAGUUCuaaAAGCAcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.