miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7711 3' -58 NC_001973.1 + 94723 0.66 0.879636
Target:  5'- gCGAGgcGGCCGgcaagcgcgcguCCGUG-UGCGUcucgaGCGGc -3'
miRNA:   3'- -GCUCuaCCGGC------------GGCACgACGCA-----UGCC- -5'
7711 3' -58 NC_001973.1 + 31362 0.66 0.879636
Target:  5'- ---cGUGGUCGCCGcgGCgGUGUGCGc -3'
miRNA:   3'- gcucUACCGGCGGCa-CGaCGCAUGCc -5'
7711 3' -58 NC_001973.1 + 74796 0.66 0.868343
Target:  5'- cCGGGGUGGgCGCgcacgcgaggcgcguCGUGC-GCGUGCu- -3'
miRNA:   3'- -GCUCUACCgGCG---------------GCACGaCGCAUGcc -5'
7711 3' -58 NC_001973.1 + 59064 0.66 0.865438
Target:  5'- gGAGGUGcgcaacguguGCCGCuuCGUGCUGCcgcaGUacACGGa -3'
miRNA:   3'- gCUCUAC----------CGGCG--GCACGACG----CA--UGCC- -5'
7711 3' -58 NC_001973.1 + 7104 0.66 0.865438
Target:  5'- gCGcGAccGCCGUCGUGCUcgaGUGCGGc -3'
miRNA:   3'- -GCuCUacCGGCGGCACGAcg-CAUGCC- -5'
7711 3' -58 NC_001973.1 + 124697 0.66 0.850446
Target:  5'- cCGAGgcGGUgGCCGaGCUGU--ACGGc -3'
miRNA:   3'- -GCUCuaCCGgCGGCaCGACGcaUGCC- -5'
7711 3' -58 NC_001973.1 + 157896 0.67 0.826571
Target:  5'- gGAGGUcgcGGCCGCCGcGCccGCGaGCGc -3'
miRNA:   3'- gCUCUA---CCGGCGGCaCGa-CGCaUGCc -5'
7711 3' -58 NC_001973.1 + 94774 0.67 0.81827
Target:  5'- aCGAGAUGcGCgucaaGCUGUGCaacGCGgACGGc -3'
miRNA:   3'- -GCUCUAC-CGg----CGGCACGa--CGCaUGCC- -5'
7711 3' -58 NC_001973.1 + 6399 0.67 0.81827
Target:  5'- aCGuuuuGAUGGCCGa-GUGC-GCGgcgGCGGc -3'
miRNA:   3'- -GCu---CUACCGGCggCACGaCGCa--UGCC- -5'
7711 3' -58 NC_001973.1 + 122569 0.67 0.801194
Target:  5'- gGuGGUGGCCggacgggcGCCGguccgaaucuuUGCUGCG-GCGGa -3'
miRNA:   3'- gCuCUACCGG--------CGGC-----------ACGACGCaUGCC- -5'
7711 3' -58 NC_001973.1 + 132276 0.67 0.792435
Target:  5'- -cAGAgGGCUgGCCGUGaC-GCGUGCGGc -3'
miRNA:   3'- gcUCUaCCGG-CGGCAC-GaCGCAUGCC- -5'
7711 3' -58 NC_001973.1 + 118418 0.68 0.765372
Target:  5'- gGAGAcgcUGGCCGCCGgGCU-CG-ACGa -3'
miRNA:   3'- gCUCU---ACCGGCGGCaCGAcGCaUGCc -5'
7711 3' -58 NC_001973.1 + 146010 0.68 0.746756
Target:  5'- gGAGcgGGuCCGCCG-GCUcgagcGCGggucgACGGa -3'
miRNA:   3'- gCUCuaCC-GGCGGCaCGA-----CGCa----UGCC- -5'
7711 3' -58 NC_001973.1 + 133989 0.69 0.72776
Target:  5'- uGuAGccGGUgGCCGUGCUcGCGUccACGGu -3'
miRNA:   3'- gC-UCuaCCGgCGGCACGA-CGCA--UGCC- -5'
7711 3' -58 NC_001973.1 + 129710 0.69 0.726801
Target:  5'- --uGGUGGCCGgCGcacauguaaaacaUGUUGCGUACGa -3'
miRNA:   3'- gcuCUACCGGCgGC-------------ACGACGCAUGCc -5'
7711 3' -58 NC_001973.1 + 132532 0.7 0.669167
Target:  5'- -uAGA-GGCCGCCGgGC-GCGgcgGCGGg -3'
miRNA:   3'- gcUCUaCCGGCGGCaCGaCGCa--UGCC- -5'
7711 3' -58 NC_001973.1 + 108249 0.7 0.669167
Target:  5'- gGAGAUcgacGGCUGCCG-GCgcGCGgagACGGa -3'
miRNA:   3'- gCUCUA----CCGGCGGCaCGa-CGCa--UGCC- -5'
7711 3' -58 NC_001973.1 + 56657 0.7 0.659255
Target:  5'- -aGGcgGGCCGuCCGUGUUGaCGUACu- -3'
miRNA:   3'- gcUCuaCCGGC-GGCACGAC-GCAUGcc -5'
7711 3' -58 NC_001973.1 + 14606 0.7 0.659255
Target:  5'- aCGcGGUGGCCGcCCG-GCUGUcgGUGCGc -3'
miRNA:   3'- -GCuCUACCGGC-GGCaCGACG--CAUGCc -5'
7711 3' -58 NC_001973.1 + 22495 0.7 0.649323
Target:  5'- gGAcGA-GGCUGCCGUGCgUGCGcgACGa -3'
miRNA:   3'- gCU-CUaCCGGCGGCACG-ACGCa-UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.