miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7711 5' -54.7 NC_001973.1 + 37326 0.66 0.948945
Target:  5'- aGCCcggaGACGAGCuucguCACG-AGCCCGgagACGa -3'
miRNA:   3'- cCGG----CUGCUCGu----GUGUaUCGGGU---UGC- -5'
7711 5' -54.7 NC_001973.1 + 119394 0.66 0.948945
Target:  5'- aGGCCGugGuGCaaacgggcgucgACGCGUuucgcgacauGCUCGACGg -3'
miRNA:   3'- -CCGGCugCuCG------------UGUGUAu---------CGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 12229 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 12464 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 16399 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 16555 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 111037 0.66 0.948945
Target:  5'- cGCCGcACGAGUACcacaauucgGCGUcgcuGCUCAACGc -3'
miRNA:   3'- cCGGC-UGCUCGUG---------UGUAu---CGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 130912 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 160581 0.66 0.948945
Target:  5'- gGGUCGAuCGAGUuCA---AGCCCGAUGa -3'
miRNA:   3'- -CCGGCU-GCUCGuGUguaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 34502 0.66 0.944603
Target:  5'- -uUgGACGAGCGCGUGUGGUUCAGCa -3'
miRNA:   3'- ccGgCUGCUCGUGUGUAUCGGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 18650 0.66 0.944603
Target:  5'- cGGcCCGACGGGCaACGCGUuGCaaaUAugGc -3'
miRNA:   3'- -CC-GGCUGCUCG-UGUGUAuCGg--GUugC- -5'
7711 5' -54.7 NC_001973.1 + 27928 0.66 0.944603
Target:  5'- aGCCGGCGAcccgacaccGCACGCAcguGCCCc--- -3'
miRNA:   3'- cCGGCUGCU---------CGUGUGUau-CGGGuugc -5'
7711 5' -54.7 NC_001973.1 + 102889 0.66 0.944603
Target:  5'- uGGUCGGacAGCGCGCGgAGgCCAGCa -3'
miRNA:   3'- -CCGGCUgcUCGUGUGUaUCgGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 112546 0.66 0.944603
Target:  5'- gGGCC-AC--GUACGCcUGGCCCGGCGc -3'
miRNA:   3'- -CCGGcUGcuCGUGUGuAUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 136861 0.66 0.940026
Target:  5'- aGCCG-CGgauacAGCugGCGgAGCUCGACGg -3'
miRNA:   3'- cCGGCuGC-----UCGugUGUaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 123863 0.66 0.940026
Target:  5'- -aCCGACGAGCACgGCAgGGa-CGACGg -3'
miRNA:   3'- ccGGCUGCUCGUG-UGUaUCggGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 81656 0.66 0.940026
Target:  5'- cGGCCGGCccGCACAgCuuguucGCCCGGCc -3'
miRNA:   3'- -CCGGCUGcuCGUGU-Guau---CGGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 74349 0.66 0.940026
Target:  5'- uGGCCGGCG-GCGCAgCGgcGCaCCGcCGu -3'
miRNA:   3'- -CCGGCUGCuCGUGU-GUauCG-GGUuGC- -5'
7711 5' -54.7 NC_001973.1 + 13450 0.66 0.940026
Target:  5'- cGGCCagcgucguGGCGgaGGC-CACGcGGCCCAACc -3'
miRNA:   3'- -CCGG--------CUGC--UCGuGUGUaUCGGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 4853 0.66 0.940026
Target:  5'- aGUCGGCGGGCGCgACGUuuccGCCguGCu -3'
miRNA:   3'- cCGGCUGCUCGUG-UGUAu---CGGguUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.