miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7715 3' -54.8 NC_001973.1 + 152444 0.66 0.927143
Target:  5'- gCAGGcUUAUCGCGcGGCGGCUuaucguaUCGAu -3'
miRNA:   3'- aGUUCaGGUAGCGC-CCGUCGA-------AGCUc -5'
7715 3' -54.8 NC_001973.1 + 83783 0.67 0.916553
Target:  5'- cUCGAGUCgGUCGCGGccCGGCacUCGGa -3'
miRNA:   3'- -AGUUCAGgUAGCGCCc-GUCGa-AGCUc -5'
7715 3' -54.8 NC_001973.1 + 54788 0.67 0.916553
Target:  5'- aCGAGcaCCGauuggaaCGCGGGCAGCUUgGAc -3'
miRNA:   3'- aGUUCa-GGUa------GCGCCCGUCGAAgCUc -5'
7715 3' -54.8 NC_001973.1 + 140059 0.67 0.904467
Target:  5'- aCGAGaCCAUCGCGGacgcGCAGCgUCa-- -3'
miRNA:   3'- aGUUCaGGUAGCGCC----CGUCGaAGcuc -5'
7715 3' -54.8 NC_001973.1 + 18857 0.67 0.898067
Target:  5'- -gAAGUUCAUCGaCGaGaGCGGCcUCGAGu -3'
miRNA:   3'- agUUCAGGUAGC-GC-C-CGUCGaAGCUC- -5'
7715 3' -54.8 NC_001973.1 + 97868 0.68 0.891433
Target:  5'- aCAGGgggCCGUCGUGGGCguAGCagUCGc- -3'
miRNA:   3'- aGUUCa--GGUAGCGCCCG--UCGa-AGCuc -5'
7715 3' -54.8 NC_001973.1 + 72624 0.68 0.884569
Target:  5'- aCAGGUCC-UC-CGGGCAcGCUaCGAa -3'
miRNA:   3'- aGUUCAGGuAGcGCCCGU-CGAaGCUc -5'
7715 3' -54.8 NC_001973.1 + 28643 0.68 0.870165
Target:  5'- gCGAGUCCugcagcugCGCGaGcGCGGCgUCGAGc -3'
miRNA:   3'- aGUUCAGGua------GCGC-C-CGUCGaAGCUC- -5'
7715 3' -54.8 NC_001973.1 + 75863 0.68 0.870165
Target:  5'- uUCGAGuUCCAUC-CGGGCAGCc----- -3'
miRNA:   3'- -AGUUC-AGGUAGcGCCCGUCGaagcuc -5'
7715 3' -54.8 NC_001973.1 + 78611 0.69 0.818509
Target:  5'- aCGAGUCCGcggacgacgaggcCGCGGGC-GC-UCGAGg -3'
miRNA:   3'- aGUUCAGGUa------------GCGCCCGuCGaAGCUC- -5'
7715 3' -54.8 NC_001973.1 + 42043 0.71 0.738504
Target:  5'- cCGAGgugagCGCGGGCAGUUUCGuGg -3'
miRNA:   3'- aGUUCagguaGCGCCCGUCGAAGCuC- -5'
7715 3' -54.8 NC_001973.1 + 111664 0.72 0.667989
Target:  5'- gCAGG-CUG-CGCGGGCAGCggaUCGAGc -3'
miRNA:   3'- aGUUCaGGUaGCGCCCGUCGa--AGCUC- -5'
7715 3' -54.8 NC_001973.1 + 105193 0.72 0.647441
Target:  5'- aUAGGUCgAUCGCGGGCAcGCUgccaGAu -3'
miRNA:   3'- aGUUCAGgUAGCGCCCGU-CGAag--CUc -5'
7715 3' -54.8 NC_001973.1 + 95060 1.1 0.003345
Target:  5'- cUCAAGUCCAUCGCGGGCAGCUUCGAGg -3'
miRNA:   3'- -AGUUCAGGUAGCGCCCGUCGAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.