miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7715 5' -62 NC_001973.1 + 45198 0.66 0.678
Target:  5'- gCGCUCGaucugGCcgggcgcgauGCGGGCCGCGugcugcCGGCc- -3'
miRNA:   3'- -GCGAGCa----CG----------CGCCCGGCGCu-----GCUGaa -5'
7715 5' -62 NC_001973.1 + 135897 0.66 0.678
Target:  5'- aGCggCG-GuCGCGGGCCG-GACGAUc- -3'
miRNA:   3'- gCGa-GCaC-GCGCCCGGCgCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 38343 0.66 0.678
Target:  5'- gGCgucaGUGcCGCcGGCgGCGGCGACg- -3'
miRNA:   3'- gCGag--CAC-GCGcCCGgCGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 133439 0.66 0.677027
Target:  5'- gCGCUCaaagucgaagucgGcGCGCGGGUCGCGcACGGa-- -3'
miRNA:   3'- -GCGAG-------------CaCGCGCCCGGCGC-UGCUgaa -5'
7715 5' -62 NC_001973.1 + 152386 0.66 0.668254
Target:  5'- gGC-CG-GCGCGGGCgggCGCGggGCGGCg- -3'
miRNA:   3'- gCGaGCaCGCGCCCG---GCGC--UGCUGaa -5'
7715 5' -62 NC_001973.1 + 28286 0.66 0.668254
Target:  5'- gCGcCUCGUG-GCGGccgagcGCCGCGuCGGCg- -3'
miRNA:   3'- -GC-GAGCACgCGCC------CGGCGCuGCUGaa -5'
7715 5' -62 NC_001973.1 + 27869 0.66 0.658482
Target:  5'- cCGCggccgCGgGCGCGGGCgCGCucucgccGCGACUc -3'
miRNA:   3'- -GCGa----GCaCGCGCCCG-GCGc------UGCUGAa -5'
7715 5' -62 NC_001973.1 + 6969 0.66 0.658482
Target:  5'- uGCUCGccCGaacaGGGCCGCcGCGGCa- -3'
miRNA:   3'- gCGAGCacGCg---CCCGGCGcUGCUGaa -5'
7715 5' -62 NC_001973.1 + 39396 0.66 0.64869
Target:  5'- uGCUCGacgGCGCGcgccaggucGGCCGCGGugaGGCg- -3'
miRNA:   3'- gCGAGCa--CGCGC---------CCGGCGCUg--CUGaa -5'
7715 5' -62 NC_001973.1 + 68699 0.66 0.64869
Target:  5'- aGCUCGcggaauugaaccUGCGCGcuuuccaGCCGCG-CGACUa -3'
miRNA:   3'- gCGAGC------------ACGCGCc------CGGCGCuGCUGAa -5'
7715 5' -62 NC_001973.1 + 81097 0.66 0.64869
Target:  5'- gCGCUgG-GCGCGGGCuCGUugaaGGCGcGCUUg -3'
miRNA:   3'- -GCGAgCaCGCGCCCG-GCG----CUGC-UGAA- -5'
7715 5' -62 NC_001973.1 + 61815 0.66 0.638886
Target:  5'- aCGCUCGUG-GC-GGCCGgGAUGuACg- -3'
miRNA:   3'- -GCGAGCACgCGcCCGGCgCUGC-UGaa -5'
7715 5' -62 NC_001973.1 + 45636 0.66 0.638886
Target:  5'- gCGCUCGUcgaGCGCGGcGUCGUacGCGGCc- -3'
miRNA:   3'- -GCGAGCA---CGCGCC-CGGCGc-UGCUGaa -5'
7715 5' -62 NC_001973.1 + 45843 0.67 0.619271
Target:  5'- gCGUUCGUGggccugggcguCGCGGGCgCGCGcuccucggccGCGGCg- -3'
miRNA:   3'- -GCGAGCAC-----------GCGCCCG-GCGC----------UGCUGaa -5'
7715 5' -62 NC_001973.1 + 68893 0.67 0.619271
Target:  5'- aGCUCGacUGCGCcauGuGCCGCGACcACUa -3'
miRNA:   3'- gCGAGC--ACGCGc--C-CGGCGCUGcUGAa -5'
7715 5' -62 NC_001973.1 + 55428 0.67 0.619271
Target:  5'- --gUCGgcgGCgGCGGGCC-CGACGGCg- -3'
miRNA:   3'- gcgAGCa--CG-CGCCCGGcGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 57195 0.67 0.609474
Target:  5'- aCGCgaCG-GCGUucagggGGGCCGuCGACGACg- -3'
miRNA:   3'- -GCGa-GCaCGCG------CCCGGC-GCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 86433 0.67 0.609474
Target:  5'- gGCUuaCGUcaGCGaCGacGGCCGCGGCGGCg- -3'
miRNA:   3'- gCGA--GCA--CGC-GC--CCGGCGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 111662 0.67 0.599692
Target:  5'- gCGCagGcUGCGCGGGCaGCGgaucgaGCGGCUg -3'
miRNA:   3'- -GCGagC-ACGCGCCCGgCGC------UGCUGAa -5'
7715 5' -62 NC_001973.1 + 140880 0.67 0.589932
Target:  5'- gCGCaUC-UGCGCGGcGUCGCGcGCGACc- -3'
miRNA:   3'- -GCG-AGcACGCGCC-CGGCGC-UGCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.