miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7715 5' -62 NC_001973.1 + 6507 0.7 0.415569
Target:  5'- gGCUgGgcgGCGCGGGCgUGCcGACGAUUUu -3'
miRNA:   3'- gCGAgCa--CGCGCCCG-GCG-CUGCUGAA- -5'
7715 5' -62 NC_001973.1 + 6969 0.66 0.658482
Target:  5'- uGCUCGccCGaacaGGGCCGCcGCGGCa- -3'
miRNA:   3'- gCGAGCacGCg---CCCGGCGcUGCUGaa -5'
7715 5' -62 NC_001973.1 + 7929 0.68 0.560845
Target:  5'- aGCgCGUGUGCGcGGCCgGCGugGuGCa- -3'
miRNA:   3'- gCGaGCACGCGC-CCGG-CGCugC-UGaa -5'
7715 5' -62 NC_001973.1 + 9919 0.73 0.295722
Target:  5'- gCGUUCGUGaccugcCGCGGgaaguugcccGCCGCGACGACg- -3'
miRNA:   3'- -GCGAGCAC------GCGCC----------CGGCGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 18815 0.71 0.390932
Target:  5'- gCGCUCGUucgccGUGCuGGCCaucgGCGACGACg- -3'
miRNA:   3'- -GCGAGCA-----CGCGcCCGG----CGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 23727 0.68 0.541671
Target:  5'- gGCUCGcUGa-CGGGCC-CGACGGCg- -3'
miRNA:   3'- gCGAGC-ACgcGCCCGGcGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 26171 0.74 0.26422
Target:  5'- cCGC-CG-GCGCGGGCgCGuCGACGGCg- -3'
miRNA:   3'- -GCGaGCaCGCGCCCG-GC-GCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 27869 0.66 0.658482
Target:  5'- cCGCggccgCGgGCGCGGGCgCGCucucgccGCGACUc -3'
miRNA:   3'- -GCGa----GCaCGCGCCCG-GCGc------UGCUGAa -5'
7715 5' -62 NC_001973.1 + 28286 0.66 0.668254
Target:  5'- gCGcCUCGUG-GCGGccgagcGCCGCGuCGGCg- -3'
miRNA:   3'- -GC-GAGCACgCGCC------CGGCGCuGCUGaa -5'
7715 5' -62 NC_001973.1 + 29771 0.69 0.467569
Target:  5'- aCGCUCcagGCGCuGGCCGuCGacGCGACUa -3'
miRNA:   3'- -GCGAGca-CGCGcCCGGC-GC--UGCUGAa -5'
7715 5' -62 NC_001973.1 + 30379 0.75 0.224761
Target:  5'- gCGaCUCGgGUGCGGGCCggcGCGGCGGCg- -3'
miRNA:   3'- -GC-GAGCaCGCGCCCGG---CGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 31354 0.72 0.344608
Target:  5'- gCGCUC-UGCGUGGucGCCGCGGCGGu-- -3'
miRNA:   3'- -GCGAGcACGCGCC--CGGCGCUGCUgaa -5'
7715 5' -62 NC_001973.1 + 38343 0.66 0.678
Target:  5'- gGCgucaGUGcCGCcGGCgGCGGCGACg- -3'
miRNA:   3'- gCGag--CAC-GCGcCCGgCGCUGCUGaa -5'
7715 5' -62 NC_001973.1 + 39396 0.66 0.64869
Target:  5'- uGCUCGacgGCGCGcgccaggucGGCCGCGGugaGGCg- -3'
miRNA:   3'- gCGAGCa--CGCGC---------CCGGCGCUg--CUGaa -5'
7715 5' -62 NC_001973.1 + 44446 0.68 0.551232
Target:  5'- gCGCUCGgGCGCGGGCgCuCGGgGAUc- -3'
miRNA:   3'- -GCGAGCaCGCGCCCG-GcGCUgCUGaa -5'
7715 5' -62 NC_001973.1 + 44479 0.7 0.399039
Target:  5'- gCGCUCGgGCGCGGGCauCGGCG-Cg- -3'
miRNA:   3'- -GCGAGCaCGCGCCCGgcGCUGCuGaa -5'
7715 5' -62 NC_001973.1 + 45198 0.66 0.678
Target:  5'- gCGCUCGaucugGCcgggcgcgauGCGGGCCGCGugcugcCGGCc- -3'
miRNA:   3'- -GCGAGCa----CG----------CGCCCGGCGCu-----GCUGaa -5'
7715 5' -62 NC_001973.1 + 45636 0.66 0.638886
Target:  5'- gCGCUCGUcgaGCGCGGcGUCGUacGCGGCc- -3'
miRNA:   3'- -GCGAGCA---CGCGCC-CGGCGc-UGCUGaa -5'
7715 5' -62 NC_001973.1 + 45843 0.67 0.619271
Target:  5'- gCGUUCGUGggccugggcguCGCGGGCgCGCGcuccucggccGCGGCg- -3'
miRNA:   3'- -GCGAGCAC-----------GCGCCCG-GCGC----------UGCUGaa -5'
7715 5' -62 NC_001973.1 + 46092 0.72 0.315987
Target:  5'- gGCUCGUGCGCuacGGCCGCGugccCGcGCUg -3'
miRNA:   3'- gCGAGCACGCGc--CCGGCGCu---GC-UGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.