miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7721 3' -52.3 NC_001973.1 + 42011 0.66 0.985778
Target:  5'- --gGCcUUCGucAAAcCGGCGAGCGUCg -3'
miRNA:   3'- cagCGaGAGU--UUUaGCCGCUCGCAGa -5'
7721 3' -52.3 NC_001973.1 + 21051 0.66 0.983972
Target:  5'- -aUGCccgagCUCGAGcUCGGCGGGCG-Cg -3'
miRNA:   3'- caGCGa----GAGUUUuAGCCGCUCGCaGa -5'
7721 3' -52.3 NC_001973.1 + 130965 0.66 0.983972
Target:  5'- -aCGCguaagaUCUUAcgcGUCGGCGAGgGUCg -3'
miRNA:   3'- caGCG------AGAGUuu-UAGCCGCUCgCAGa -5'
7721 3' -52.3 NC_001973.1 + 71952 0.66 0.983972
Target:  5'- -aCGCguaagaUCUUAcgcGUCGGCGAGgGUCa -3'
miRNA:   3'- caGCG------AGAGUuu-UAGCCGCUCgCAGa -5'
7721 3' -52.3 NC_001973.1 + 121670 0.66 0.980727
Target:  5'- cGUCGCUCgcggCGcccGGAuaccgguacgcgagcUCGGCGgcGGCGUCg -3'
miRNA:   3'- -CAGCGAGa---GU---UUU---------------AGCCGC--UCGCAGa -5'
7721 3' -52.3 NC_001973.1 + 111061 0.67 0.973906
Target:  5'- cGUCGCUgCUCAAcg-CGGCGcccgacgugggccGCGUCg -3'
miRNA:   3'- -CAGCGA-GAGUUuuaGCCGCu------------CGCAGa -5'
7721 3' -52.3 NC_001973.1 + 5027 0.67 0.972242
Target:  5'- -gCGCUCUUcucugcuGUCGGCGuugagaaagcgcAGCGUCa -3'
miRNA:   3'- caGCGAGAGuuu----UAGCCGC------------UCGCAGa -5'
7721 3' -52.3 NC_001973.1 + 45636 0.67 0.969603
Target:  5'- -gCGCUCgUCGAGcgCGGCGucguacgcggccugcGCGUCUc -3'
miRNA:   3'- caGCGAG-AGUUUuaGCCGCu--------------CGCAGA- -5'
7721 3' -52.3 NC_001973.1 + 155433 0.67 0.962761
Target:  5'- -cCGCUCUCGGGccCGGUGAGCcugCUc -3'
miRNA:   3'- caGCGAGAGUUUuaGCCGCUCGca-GA- -5'
7721 3' -52.3 NC_001973.1 + 10687 0.67 0.962761
Target:  5'- cGUUGCcCUCGAucacgaucUCGGCGGGCGgCUc -3'
miRNA:   3'- -CAGCGaGAGUUuu------AGCCGCUCGCaGA- -5'
7721 3' -52.3 NC_001973.1 + 157101 0.68 0.946909
Target:  5'- --gGUUgUCAAAGUCGGCGGGaaagGUCa -3'
miRNA:   3'- cagCGAgAGUUUUAGCCGCUCg---CAGa -5'
7721 3' -52.3 NC_001973.1 + 40138 0.68 0.946909
Target:  5'- cGUCGCgcccaucgUCUCAAAGuucUCGGCGGucGCGUg- -3'
miRNA:   3'- -CAGCG--------AGAGUUUU---AGCCGCU--CGCAga -5'
7721 3' -52.3 NC_001973.1 + 160788 0.69 0.932463
Target:  5'- -aCGCccaagCUCGAGcUCGGCGGGCG-Cg -3'
miRNA:   3'- caGCGa----GAGUUUuAGCCGCUCGCaGa -5'
7721 3' -52.3 NC_001973.1 + 95960 0.69 0.927148
Target:  5'- -aCGCUUUCGacGAGaCGGCGGGCGcgCUg -3'
miRNA:   3'- caGCGAGAGU--UUUaGCCGCUCGCa-GA- -5'
7721 3' -52.3 NC_001973.1 + 30675 0.69 0.921581
Target:  5'- aUUGUaCUCGGAGUUGGCGAagacgaacGCGUCg -3'
miRNA:   3'- cAGCGaGAGUUUUAGCCGCU--------CGCAGa -5'
7721 3' -52.3 NC_001973.1 + 56200 0.69 0.915764
Target:  5'- aGUCGCUUUC---GUCGGCGucGGCGcCg -3'
miRNA:   3'- -CAGCGAGAGuuuUAGCCGC--UCGCaGa -5'
7721 3' -52.3 NC_001973.1 + 38072 0.69 0.915764
Target:  5'- cGUCGaaCUCGAGgcuGUC-GCGGGCGUCUu -3'
miRNA:   3'- -CAGCgaGAGUUU---UAGcCGCUCGCAGA- -5'
7721 3' -52.3 NC_001973.1 + 10331 0.7 0.890021
Target:  5'- -gCGCUCgUUGAGGUCGGCGAuGCGg-- -3'
miRNA:   3'- caGCGAG-AGUUUUAGCCGCU-CGCaga -5'
7721 3' -52.3 NC_001973.1 + 149326 0.7 0.882981
Target:  5'- uGUCGCUCUCAGAGUCcgacGCgGAGCa--- -3'
miRNA:   3'- -CAGCGAGAGUUUUAGc---CG-CUCGcaga -5'
7721 3' -52.3 NC_001973.1 + 133439 0.7 0.875707
Target:  5'- -gCGCUCaaagUCGAAGUCGGCGcGCGg-- -3'
miRNA:   3'- caGCGAG----AGUUUUAGCCGCuCGCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.