miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7721 5' -63.3 NC_001973.1 + 150042 0.66 0.584719
Target:  5'- cCGGGCcggGCGCgGCCgaaGGCUGGAa -3'
miRNA:   3'- cGUCCGcgaCGCGgCGGg--CCGAUCUa -5'
7721 5' -63.3 NC_001973.1 + 146106 0.66 0.565222
Target:  5'- uCGGGcCGCgGCGCUGagCCGGCUcgGGAg -3'
miRNA:   3'- cGUCC-GCGaCGCGGCg-GGCCGA--UCUa -5'
7721 5' -63.3 NC_001973.1 + 146063 0.66 0.565222
Target:  5'- -uGGGcCGCgGCGCCGagCCGGCUcGGGc -3'
miRNA:   3'- cgUCC-GCGaCGCGGCg-GGCCGA-UCUa -5'
7721 5' -63.3 NC_001973.1 + 5714 0.66 0.565222
Target:  5'- -gAGGaGC-GCGUCGCCCcGCUGGGUg -3'
miRNA:   3'- cgUCCgCGaCGCGGCGGGcCGAUCUA- -5'
7721 5' -63.3 NC_001973.1 + 44552 0.66 0.555536
Target:  5'- cGCcGGCGCUgcaauuuauagGCGCCGCCC-GCUu--- -3'
miRNA:   3'- -CGuCCGCGA-----------CGCGGCGGGcCGAucua -5'
7721 5' -63.3 NC_001973.1 + 81799 0.66 0.545898
Target:  5'- uGCAcGGcCGCgguguccgGCGCCGCCggCGGCgacgAGAc -3'
miRNA:   3'- -CGU-CC-GCGa-------CGCGGCGG--GCCGa---UCUa -5'
7721 5' -63.3 NC_001973.1 + 19540 0.66 0.545898
Target:  5'- gGCGGuGCGCgGCGUuuacgUGCCCGaCUGGAa -3'
miRNA:   3'- -CGUC-CGCGaCGCG-----GCGGGCcGAUCUa -5'
7721 5' -63.3 NC_001973.1 + 62584 0.66 0.536315
Target:  5'- aGCGGGCGCagcgacGCGUCGCUCGaGCg---- -3'
miRNA:   3'- -CGUCCGCGa-----CGCGGCGGGC-CGaucua -5'
7721 5' -63.3 NC_001973.1 + 59003 0.66 0.536315
Target:  5'- cGCAGGCGagcgGCGCCGacguguucuuuUCCGGCg---- -3'
miRNA:   3'- -CGUCCGCga--CGCGGC-----------GGGCCGaucua -5'
7721 5' -63.3 NC_001973.1 + 105723 0.66 0.526792
Target:  5'- uGCAGGCGCgGCGCCGuUUCGuGUUGc-- -3'
miRNA:   3'- -CGUCCGCGaCGCGGC-GGGC-CGAUcua -5'
7721 5' -63.3 NC_001973.1 + 94404 0.67 0.507941
Target:  5'- cGCGGccCGCgGCGCCGCCCGGaccGGc -3'
miRNA:   3'- -CGUCc-GCGaCGCGGCGGGCCgauCUa -5'
7721 5' -63.3 NC_001973.1 + 45863 0.67 0.489382
Target:  5'- cGCGGGCGC-GCGCUccucgGCCgCGGCg---- -3'
miRNA:   3'- -CGUCCGCGaCGCGG-----CGG-GCCGaucua -5'
7721 5' -63.3 NC_001973.1 + 93743 0.67 0.489382
Target:  5'- -gAGGCGa---GCCGCCCGGCgaccaGGAg -3'
miRNA:   3'- cgUCCGCgacgCGGCGGGCCGa----UCUa -5'
7721 5' -63.3 NC_001973.1 + 21658 0.68 0.458588
Target:  5'- gGCAGGCcgagcacguagccGCuuauccgcacgggaUGCGCCGCCguCGGCUGGu- -3'
miRNA:   3'- -CGUCCG-------------CG--------------ACGCGGCGG--GCCGAUCua -5'
7721 5' -63.3 NC_001973.1 + 51270 0.68 0.453261
Target:  5'- aGCGGGCcaGCaaaGCGUaaaCGCCCGGCUcGAg -3'
miRNA:   3'- -CGUCCG--CGa--CGCG---GCGGGCCGAuCUa -5'
7721 5' -63.3 NC_001973.1 + 47729 0.68 0.453261
Target:  5'- aGUcGGUGCUGacgcugacgcgGCCGCCCGGC-GGAa -3'
miRNA:   3'- -CGuCCGCGACg----------CGGCGGGCCGaUCUa -5'
7721 5' -63.3 NC_001973.1 + 136574 0.69 0.401942
Target:  5'- aGCAuGGCGCUGCG-CGCC-GGCgcGAc -3'
miRNA:   3'- -CGU-CCGCGACGCgGCGGgCCGauCUa -5'
7721 5' -63.3 NC_001973.1 + 23572 0.69 0.401942
Target:  5'- gGCcGGCGgacGCGCCGCCCGcGCUGc-- -3'
miRNA:   3'- -CGuCCGCga-CGCGGCGGGC-CGAUcua -5'
7721 5' -63.3 NC_001973.1 + 10326 0.69 0.377704
Target:  5'- aGCGGGCGCUcguugaggucgGCgaugcgGCCGUUCGGCUGGc- -3'
miRNA:   3'- -CGUCCGCGA-----------CG------CGGCGGGCCGAUCua -5'
7721 5' -63.3 NC_001973.1 + 104266 0.69 0.369846
Target:  5'- gGCGgcGGCGC--CGCCGCCgGGCUGGu- -3'
miRNA:   3'- -CGU--CCGCGacGCGGCGGgCCGAUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.