miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 3' -56.4 NC_001973.1 + 88897 1.09 0.002997
Target:  5'- cAGUCCGUGCUUCGCGCGAAACCCGCAg -3'
miRNA:   3'- -UCAGGCACGAAGCGCGCUUUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 140700 0.82 0.172422
Target:  5'- cGUCCGUGUacgccaccaacugUUUGUGCGGGACCCGCGc -3'
miRNA:   3'- uCAGGCACG-------------AAGCGCGCUUUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 774 0.71 0.671528
Target:  5'- cGG-CCGUaguuGCcUCGCGUGAAAUCCGCc -3'
miRNA:   3'- -UCaGGCA----CGaAGCGCGCUUUGGGCGu -5'
7722 3' -56.4 NC_001973.1 + 82249 0.71 0.671528
Target:  5'- uGUCCGUGUgcacgUCGCGC--AGCCCcgGCAu -3'
miRNA:   3'- uCAGGCACGa----AGCGCGcuUUGGG--CGU- -5'
7722 3' -56.4 NC_001973.1 + 108433 0.7 0.68162
Target:  5'- gAGagCGaGCggcgcUCGCGCGAcGCCCGCAc -3'
miRNA:   3'- -UCagGCaCGa----AGCGCGCUuUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 31751 0.7 0.721498
Target:  5'- gGG-CCGUGCcgCGCGCGcuGCCCa-- -3'
miRNA:   3'- -UCaGGCACGaaGCGCGCuuUGGGcgu -5'
7722 3' -56.4 NC_001973.1 + 4170 0.69 0.741018
Target:  5'- gGGUCCGUcGC--CGCGCauguuGAAACgCCGCAg -3'
miRNA:   3'- -UCAGGCA-CGaaGCGCG-----CUUUG-GGCGU- -5'
7722 3' -56.4 NC_001973.1 + 34683 0.69 0.760163
Target:  5'- uGUCCGUGCUcuugaacgcggUCGCGUGccacGCCaGCAg -3'
miRNA:   3'- uCAGGCACGA-----------AGCGCGCuu--UGGgCGU- -5'
7722 3' -56.4 NC_001973.1 + 8783 0.69 0.769572
Target:  5'- gAGgCCGaGCgucaaCGCGaCGGAACCCGCGg -3'
miRNA:   3'- -UCaGGCaCGaa---GCGC-GCUUUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 128158 0.68 0.787109
Target:  5'- gGGUCCGaggGCUUggugaucacauccUGCGCGAugUCCGCc -3'
miRNA:   3'- -UCAGGCa--CGAA-------------GCGCGCUuuGGGCGu -5'
7722 3' -56.4 NC_001973.1 + 66805 0.68 0.800606
Target:  5'- ---aCGUGCUgCGCGCGcaguucgucuugggcAAGCCCGCc -3'
miRNA:   3'- ucagGCACGAaGCGCGC---------------UUUGGGCGu -5'
7722 3' -56.4 NC_001973.1 + 138761 0.68 0.823182
Target:  5'- cGUCCGUGCaccCGgcCGCGAAcuGCCCGa- -3'
miRNA:   3'- uCAGGCACGaa-GC--GCGCUU--UGGGCgu -5'
7722 3' -56.4 NC_001973.1 + 129660 0.68 0.823182
Target:  5'- cGGUggUCGUGU--CGaaaGCGAAGCCCGCGc -3'
miRNA:   3'- -UCA--GGCACGaaGCg--CGCUUUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 114421 0.68 0.831564
Target:  5'- cGGUCgCGaGCcugCGCGCGAGccgGCUCGCGa -3'
miRNA:   3'- -UCAG-GCaCGaa-GCGCGCUU---UGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 7314 0.67 0.855607
Target:  5'- uGUCgGUGaa-CGUGCGcgGCCCGCc -3'
miRNA:   3'- uCAGgCACgaaGCGCGCuuUGGGCGu -5'
7722 3' -56.4 NC_001973.1 + 51792 0.67 0.858681
Target:  5'- gAGUUCGaauaccugaagaacaUGCU--GCGCGAGgcGCCCGCGu -3'
miRNA:   3'- -UCAGGC---------------ACGAagCGCGCUU--UGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 46154 0.67 0.866224
Target:  5'- cGcCUGUGCUgggacggacugguguUCGCGCc--GCCCGCGg -3'
miRNA:   3'- uCaGGCACGA---------------AGCGCGcuuUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 535 0.67 0.87065
Target:  5'- -cUCCGUGCgccaaUUCGCGa-AAACUCGCGu -3'
miRNA:   3'- ucAGGCACG-----AAGCGCgcUUUGGGCGU- -5'
7722 3' -56.4 NC_001973.1 + 134989 0.66 0.891616
Target:  5'- cGUCCGgGCcgUCGgGCGGGAgCCGg- -3'
miRNA:   3'- uCAGGCaCGa-AGCgCGCUUUgGGCgu -5'
7722 3' -56.4 NC_001973.1 + 120738 0.66 0.898161
Target:  5'- gAGgCCGUGUggCGCGCGcAGCCgccgacguguucCGCAa -3'
miRNA:   3'- -UCaGGCACGaaGCGCGCuUUGG------------GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.