miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 5' -54.6 NC_001973.1 + 4712 0.67 0.927676
Target:  5'- aCUCGUAGUggUCGCGCaAACGgaucaaguCGAACg -3'
miRNA:   3'- -GAGCGUCGagAGCGCGcUUGU--------GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 62853 0.67 0.927676
Target:  5'- -aCGguGCccggaacCUCGC-CGAACugGAGCg -3'
miRNA:   3'- gaGCguCGa------GAGCGcGCUUGugCUUG- -5'
7722 5' -54.6 NC_001973.1 + 65561 0.67 0.927676
Target:  5'- uCUCGUcGCg--CGCGCu-GCGCGAGCu -3'
miRNA:   3'- -GAGCGuCGagaGCGCGcuUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 73589 0.67 0.927676
Target:  5'- aCUCGUucGGCUUuaGCGCGAcC-CGGGCg -3'
miRNA:   3'- -GAGCG--UCGAGagCGCGCUuGuGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 91435 0.67 0.927676
Target:  5'- -gUGCGGcCUCUC-CGCccuGAACAUGAGCc -3'
miRNA:   3'- gaGCGUC-GAGAGcGCG---CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 121304 0.67 0.922236
Target:  5'- -cCGCGGCgcgCGCcgGCGGACGCGccGACg -3'
miRNA:   3'- gaGCGUCGagaGCG--CGCUUGUGC--UUG- -5'
7722 5' -54.6 NC_001973.1 + 36078 0.67 0.922236
Target:  5'- cCUCGUGGCguaUUCGCacGUGAcCGCGAGCc -3'
miRNA:   3'- -GAGCGUCGa--GAGCG--CGCUuGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 33067 0.67 0.922236
Target:  5'- cCUCGCccuccAGCUC-CGCGCcgugGAACACGc-- -3'
miRNA:   3'- -GAGCG-----UCGAGaGCGCG----CUUGUGCuug -5'
7722 5' -54.6 NC_001973.1 + 57801 0.67 0.916553
Target:  5'- aCUCGCAGCUCcCGCucauuuugGCGAaguacuccugcgGCGUGGACu -3'
miRNA:   3'- -GAGCGUCGAGaGCG--------CGCU------------UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 60414 0.67 0.916553
Target:  5'- uCUUGCAGCgggCGCGCucGCugGAu- -3'
miRNA:   3'- -GAGCGUCGagaGCGCGcuUGugCUug -5'
7722 5' -54.6 NC_001973.1 + 886 0.67 0.916553
Target:  5'- aCUCGgccguCAGCUCgCGCGCGuucuCGAGCc -3'
miRNA:   3'- -GAGC-----GUCGAGaGCGCGCuuguGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 143098 0.67 0.916553
Target:  5'- gUCGCAGUgCUUcUGCG-GCGCGGACg -3'
miRNA:   3'- gAGCGUCGaGAGcGCGCuUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 29698 0.67 0.916553
Target:  5'- cCUCGCccgacugaggAGCgUC-CGCGCGGACAUGcaaAACg -3'
miRNA:   3'- -GAGCG----------UCG-AGaGCGCGCUUGUGC---UUG- -5'
7722 5' -54.6 NC_001973.1 + 75506 0.67 0.916553
Target:  5'- -cCGCAgGCcgUCUCGCacggagauuCGAACGCGGACa -3'
miRNA:   3'- gaGCGU-CG--AGAGCGc--------GCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 7261 0.67 0.91063
Target:  5'- -gCGCAGCgggCUCgGCGCGcGGCGCGcccGCu -3'
miRNA:   3'- gaGCGUCGa--GAG-CGCGC-UUGUGCu--UG- -5'
7722 5' -54.6 NC_001973.1 + 74478 0.67 0.91063
Target:  5'- -aCGCAGCgcccgCUCGaCGCGu---CGAACg -3'
miRNA:   3'- gaGCGUCGa----GAGC-GCGCuuguGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 105409 0.67 0.91063
Target:  5'- gCUUGUAGUUgUUGgGCGAGCGCGc-- -3'
miRNA:   3'- -GAGCGUCGAgAGCgCGCUUGUGCuug -5'
7722 5' -54.6 NC_001973.1 + 123067 0.67 0.91063
Target:  5'- -aCGC-GCUCUCGCcCGG--GCGAGCa -3'
miRNA:   3'- gaGCGuCGAGAGCGcGCUugUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 142511 0.67 0.904467
Target:  5'- aCUCG-AGCgcaacUUCGaCGUGAACAUGGACa -3'
miRNA:   3'- -GAGCgUCGa----GAGC-GCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 117938 0.68 0.898068
Target:  5'- -gCGCGGCaagCGCGaCGGGCGCGAc- -3'
miRNA:   3'- gaGCGUCGagaGCGC-GCUUGUGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.