miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7723 3' -55.2 NC_001973.1 + 31403 0.66 0.939387
Target:  5'- uGCUCGUGCUCG-UCGUCGUGgUGgGCa -3'
miRNA:   3'- -UGAGCACGGGCgAGUGGCACaACaUG- -5'
7723 3' -55.2 NC_001973.1 + 15534 0.66 0.939387
Target:  5'- --aCGuUGCgCGCgagCAgauCCGUGUUGUGCg -3'
miRNA:   3'- ugaGC-ACGgGCGa--GU---GGCACAACAUG- -5'
7723 3' -55.2 NC_001973.1 + 74895 0.66 0.929404
Target:  5'- aGCUCGcgaGCgCGCUCAUgGUGUuUGUGu -3'
miRNA:   3'- -UGAGCa--CGgGCGAGUGgCACA-ACAUg -5'
7723 3' -55.2 NC_001973.1 + 14665 0.67 0.912621
Target:  5'- cGCUCGUccGCCCGC-CGCCcgGUGcUGUucgACa -3'
miRNA:   3'- -UGAGCA--CGGGCGaGUGG--CACaACA---UG- -5'
7723 3' -55.2 NC_001973.1 + 123500 0.67 0.879905
Target:  5'- gGCUCGUcgcacaccacgGCgCGCUCGCCGgcgcaGUGCa -3'
miRNA:   3'- -UGAGCA-----------CGgGCGAGUGGCacaa-CAUG- -5'
7723 3' -55.2 NC_001973.1 + 54604 0.69 0.789507
Target:  5'- -gUCGUGCCCGaugaUCAUgGUGUUGc-- -3'
miRNA:   3'- ugAGCACGGGCg---AGUGgCACAACaug -5'
7723 3' -55.2 NC_001973.1 + 4477 0.71 0.73223
Target:  5'- aACUCGUGCCCGUg-GCCGauuucGUGCa -3'
miRNA:   3'- -UGAGCACGGGCGagUGGCacaa-CAUG- -5'
7723 3' -55.2 NC_001973.1 + 106715 0.71 0.712337
Target:  5'- uACUCGUaUCCGCaCGCCGUGUccgcGUACa -3'
miRNA:   3'- -UGAGCAcGGGCGaGUGGCACAa---CAUG- -5'
7723 3' -55.2 NC_001973.1 + 139564 0.73 0.620448
Target:  5'- uGCgUUGUGCCCGUUCGCCGca--GUGCa -3'
miRNA:   3'- -UG-AGCACGGGCGAGUGGCacaaCAUG- -5'
7723 3' -55.2 NC_001973.1 + 97217 0.74 0.519276
Target:  5'- gGCgcgCGUGCCC-CUCAgaccgggcaaauUCGUGUUGUACg -3'
miRNA:   3'- -UGa--GCACGGGcGAGU------------GGCACAACAUG- -5'
7723 3' -55.2 NC_001973.1 + 142321 0.76 0.434193
Target:  5'- cGCUCGUGCUCGcCUCGCUGgGUUucGUGCa -3'
miRNA:   3'- -UGAGCACGGGC-GAGUGGCaCAA--CAUG- -5'
7723 3' -55.2 NC_001973.1 + 88773 1.1 0.003048
Target:  5'- cACUCGUGCCCGCUCACCGUGUUGUACg -3'
miRNA:   3'- -UGAGCACGGGCGAGUGGCACAACAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.