miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7723 5' -53.5 NC_001973.1 + 4961 0.66 0.966652
Target:  5'- cGAACGGcACgGCGA--GCCGGUCGUg -3'
miRNA:   3'- -UUUGUUuUGaCGCUgcCGGCCAGCGu -5'
7723 5' -53.5 NC_001973.1 + 157937 0.66 0.96331
Target:  5'- uAGACAAGAUaaUGaccuCGGCGGUCGaGUCGCc -3'
miRNA:   3'- -UUUGUUUUG--AC----GCUGCCGGC-CAGCGu -5'
7723 5' -53.5 NC_001973.1 + 83082 0.66 0.955939
Target:  5'- cGGC-GAGCgGCGGCGGCgCcGUCGCGc -3'
miRNA:   3'- uUUGuUUUGaCGCUGCCG-GcCAGCGU- -5'
7723 5' -53.5 NC_001973.1 + 27830 0.66 0.955939
Target:  5'- -uGCAGGACcucuUGCGGCccgguuGGCCGG-CGCu -3'
miRNA:   3'- uuUGUUUUG----ACGCUG------CCGGCCaGCGu -5'
7723 5' -53.5 NC_001973.1 + 17033 0.67 0.947621
Target:  5'- uGAGCAGAcuCgugGUGGCGGUCGG-CGCu -3'
miRNA:   3'- -UUUGUUUu-Ga--CGCUGCCGGCCaGCGu -5'
7723 5' -53.5 NC_001973.1 + 98253 0.67 0.947621
Target:  5'- ------cGCUGCG-CGGCgcUGGUCGCGu -3'
miRNA:   3'- uuuguuuUGACGCuGCCG--GCCAGCGU- -5'
7723 5' -53.5 NC_001973.1 + 157872 0.67 0.947621
Target:  5'- cGACGAGGC-GCuGCGGCUcgugucggaGGUCGCGg -3'
miRNA:   3'- uUUGUUUUGaCGcUGCCGG---------CCAGCGU- -5'
7723 5' -53.5 NC_001973.1 + 61812 0.67 0.943097
Target:  5'- --cCGAcGCUcGUGGCGGCCGGgauguaCGCGu -3'
miRNA:   3'- uuuGUUuUGA-CGCUGCCGGCCa-----GCGU- -5'
7723 5' -53.5 NC_001973.1 + 95358 0.67 0.943097
Target:  5'- cGugGAAGCUGUucGACGGCCuGGaCGUg -3'
miRNA:   3'- uUugUUUUGACG--CUGCCGG-CCaGCGu -5'
7723 5' -53.5 NC_001973.1 + 8597 0.67 0.938326
Target:  5'- -cGCGAGAaaGcCGGCGGCCGcGcCGCGg -3'
miRNA:   3'- uuUGUUUUgaC-GCUGCCGGC-CaGCGU- -5'
7723 5' -53.5 NC_001973.1 + 152372 0.67 0.938326
Target:  5'- uGAGCGA-GCcG-GACGGCCGG-CGCGg -3'
miRNA:   3'- -UUUGUUuUGaCgCUGCCGGCCaGCGU- -5'
7723 5' -53.5 NC_001973.1 + 72825 0.67 0.933306
Target:  5'- uGACGAGGC--CGGCGGCCGccgCGCAg -3'
miRNA:   3'- uUUGUUUUGacGCUGCCGGCca-GCGU- -5'
7723 5' -53.5 NC_001973.1 + 124379 0.67 0.928036
Target:  5'- cGGACAGGGC-GCaGCGcGCCGGcCGCGc -3'
miRNA:   3'- -UUUGUUUUGaCGcUGC-CGGCCaGCGU- -5'
7723 5' -53.5 NC_001973.1 + 124195 0.67 0.928036
Target:  5'- -cGCGAGgucGCgGCGGCGcGCCGGcUCGUg -3'
miRNA:   3'- uuUGUUU---UGaCGCUGC-CGGCC-AGCGu -5'
7723 5' -53.5 NC_001973.1 + 24613 0.68 0.922515
Target:  5'- --cCAAAACgcGCGGCGGCaGG-CGCAg -3'
miRNA:   3'- uuuGUUUUGa-CGCUGCCGgCCaGCGU- -5'
7723 5' -53.5 NC_001973.1 + 53873 0.68 0.922515
Target:  5'- -cGCcGAGC-GCGGCGGCCguGGcCGCAu -3'
miRNA:   3'- uuUGuUUUGaCGCUGCCGG--CCaGCGU- -5'
7723 5' -53.5 NC_001973.1 + 80443 0.68 0.916743
Target:  5'- gGAGCGGAucGCggucugGCGGCGGuCCGG-CGCc -3'
miRNA:   3'- -UUUGUUU--UGa-----CGCUGCC-GGCCaGCGu -5'
7723 5' -53.5 NC_001973.1 + 74326 0.68 0.904453
Target:  5'- cGAGCAGu-CUGCGGucaaagauaUGGCCGGcggCGCAg -3'
miRNA:   3'- -UUUGUUuuGACGCU---------GCCGGCCa--GCGU- -5'
7723 5' -53.5 NC_001973.1 + 121222 0.68 0.897939
Target:  5'- aGAGCGAGcgccAC-GCGGCGGCgCGGcgcgUCGCAg -3'
miRNA:   3'- -UUUGUUU----UGaCGCUGCCG-GCC----AGCGU- -5'
7723 5' -53.5 NC_001973.1 + 135891 0.69 0.883474
Target:  5'- cGACAGAGCgGCGgucGCgGGCCGGacgaucgUCGCAg -3'
miRNA:   3'- uUUGUUUUGaCGC---UG-CCGGCC-------AGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.