Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 101214 | 0.7 | 0.358367 |
Target: 5'- gGGCGGCgcuucuGGucGCGCcacaGCGCGCCCa--- -3' miRNA: 3'- -CCGCCG------CCuuCGCG----CGCGCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 55830 | 0.7 | 0.358367 |
Target: 5'- aGGCcuGCGGAccGGCGagggcgaGCGCGCCCGc-- -3' miRNA: 3'- -CCGc-CGCCU--UCGCg------CGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 132441 | 0.7 | 0.396792 |
Target: 5'- cGUGGUGGAGGCGCcggcgggGCGCgGCCuCGUc- -3' miRNA: 3'- cCGCCGCCUUCGCG-------CGCG-CGG-GCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 135863 | 0.69 | 0.422431 |
Target: 5'- aGGUGuGCGucGGGUGCGUGUGCCCGa-- -3' miRNA: 3'- -CCGC-CGCc-UUCGCGCGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 38842 | 0.69 | 0.422431 |
Target: 5'- cGGCGGCGGcGAGgGCGCGgGCg----- -3' miRNA: 3'- -CCGCCGCC-UUCgCGCGCgCGggcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 158830 | 0.69 | 0.447296 |
Target: 5'- cGGCGGCcG-AGCGCGCGgacgagcCGCCCa--- -3' miRNA: 3'- -CCGCCGcCuUCGCGCGC-------GCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 104355 | 0.69 | 0.430912 |
Target: 5'- cGGCGGCGGcgacgaucAAGCGgGCGUcCUCGUc- -3' miRNA: 3'- -CCGCCGCC--------UUCGCgCGCGcGGGCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 39277 | 0.69 | 0.448168 |
Target: 5'- cGCGGCGc-AGCGCGUGC-UCCGUGu -3' miRNA: 3'- cCGCCGCcuUCGCGCGCGcGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 158689 | 0.69 | 0.414052 |
Target: 5'- cGGCGGCcG-AGCGCGCGCcuaccgacGCCCu--- -3' miRNA: 3'- -CCGCCGcCuUCGCGCGCG--------CGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 137201 | 0.69 | 0.448168 |
Target: 5'- cGCGGCGcGAGucGCGCggcgGCGCGUCCGc-- -3' miRNA: 3'- cCGCCGC-CUU--CGCG----CGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 106901 | 0.69 | 0.405775 |
Target: 5'- cGCGGCaaucgaccGAAGCGCGCGUGCgcuucguguCCGUGc -3' miRNA: 3'- cCGCCGc-------CUUCGCGCGCGCG---------GGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 86585 | 0.69 | 0.430912 |
Target: 5'- --aGGCGGAGcuCGCGCGCGCCgGc-- -3' miRNA: 3'- ccgCCGCCUUc-GCGCGCGCGGgCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 17111 | 0.69 | 0.414052 |
Target: 5'- uGGCGucccaGCGG-AGCGCGgGCGCCaCGc-- -3' miRNA: 3'- -CCGC-----CGCCuUCGCGCgCGCGG-GCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 7939 | 0.69 | 0.430912 |
Target: 5'- cGCGGcCGGcguGGUGCaCGCGCCCGc-- -3' miRNA: 3'- cCGCC-GCCu--UCGCGcGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 45966 | 0.69 | 0.430912 |
Target: 5'- cGGCGGCc--GGCGCGCuCGCCCu--- -3' miRNA: 3'- -CCGCCGccuUCGCGCGcGCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 131490 | 0.69 | 0.439492 |
Target: 5'- aGGuCGGCGGGccCGcCGCGCGCCgGa-- -3' miRNA: 3'- -CC-GCCGCCUucGC-GCGCGCGGgCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 3569 | 0.68 | 0.502097 |
Target: 5'- gGGCGcGCGauGAccgacGGCGCGCGCuucgGCUCGUAc -3' miRNA: 3'- -CCGC-CGC--CU-----UCGCGCGCG----CGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 105226 | 0.68 | 0.492902 |
Target: 5'- uGGC-GCGGAAcGCGCaUGUGUCCGUGc -3' miRNA: 3'- -CCGcCGCCUU-CGCGcGCGCGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 94428 | 0.68 | 0.492902 |
Target: 5'- cGGCGGCGuuGGCcCGuCGCGCuaGUAAu -3' miRNA: 3'- -CCGCCGCcuUCGcGC-GCGCGggCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 5887 | 0.68 | 0.492902 |
Target: 5'- uGCGGCGc-AGCGCGCGCGaCgCGa-- -3' miRNA: 3'- cCGCCGCcuUCGCGCGCGC-GgGCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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