miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 55229 0.68 0.456939
Target:  5'- aGGCGGCGGcGGCGgGCGgcgagagGCCUGc-- -3'
miRNA:   3'- -CCGCCGCCuUCGCgCGCg------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 74803 0.68 0.492902
Target:  5'- gGGCGcGCacgcGAGGCGCGuCGUGCgCGUGc -3'
miRNA:   3'- -CCGC-CGc---CUUCGCGC-GCGCGgGCAUu -5'
7728 3' -62.9 NC_001973.1 + 111289 0.68 0.4658
Target:  5'- cGGUGGUGGuGGCGC-CGCGCgUGa-- -3'
miRNA:   3'- -CCGCCGCCuUCGCGcGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 111940 0.68 0.508578
Target:  5'- cGGCGGCgacuucuccgacccGGcGGCcgaGCGCGUGCCCa--- -3'
miRNA:   3'- -CCGCCG--------------CCuUCG---CGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 145034 0.68 0.483785
Target:  5'- uGCGGCGcGAGCGCGUcgaGCGCCg---- -3'
miRNA:   3'- cCGCCGCcUUCGCGCG---CGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 5887 0.68 0.492902
Target:  5'- uGCGGCGc-AGCGCGCGCGaCgCGa-- -3'
miRNA:   3'- cCGCCGCcuUCGCGCGCGC-GgGCauu -5'
7728 3' -62.9 NC_001973.1 + 94428 0.68 0.492902
Target:  5'- cGGCGGCGuuGGCcCGuCGCGCuaGUAAu -3'
miRNA:   3'- -CCGCCGCcuUCGcGC-GCGCGggCAUU- -5'
7728 3' -62.9 NC_001973.1 + 105226 0.68 0.492902
Target:  5'- uGGC-GCGGAAcGCGCaUGUGUCCGUGc -3'
miRNA:   3'- -CCGcCGCCUU-CGCGcGCGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 3569 0.68 0.502097
Target:  5'- gGGCGcGCGauGAccgacGGCGCGCGCuucgGCUCGUAc -3'
miRNA:   3'- -CCGC-CGC--CU-----UCGCGCGCG----CGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 124763 0.68 0.483785
Target:  5'- cGC-GCGGu-GCGCGCGCGCuCUGUu- -3'
miRNA:   3'- cCGcCGCCuuCGCGCGCGCG-GGCAuu -5'
7728 3' -62.9 NC_001973.1 + 29980 0.68 0.511367
Target:  5'- cGGUGGUGGgcGCGUauaucuGCGaGCCCGa-- -3'
miRNA:   3'- -CCGCCGCCuuCGCG------CGCgCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 81102 0.67 0.530112
Target:  5'- gGGC-GCGGGcucguugaaGGCGCGCuuGCGCCCcgacGUGAc -3'
miRNA:   3'- -CCGcCGCCU---------UCGCGCG--CGCGGG----CAUU- -5'
7728 3' -62.9 NC_001973.1 + 105471 0.67 0.530112
Target:  5'- cGCGGCGGGcacaugauguGGcCGgGCGCGUugccgCCGUAGu -3'
miRNA:   3'- cCGCCGCCU----------UC-GCgCGCGCG-----GGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 108440 0.67 0.530112
Target:  5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3'
miRNA:   3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 82447 0.67 0.520706
Target:  5'- cGGCGuaGGucauGCGCGUuauGCGCgCCGUGu -3'
miRNA:   3'- -CCGCcgCCuu--CGCGCG---CGCG-GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 19539 0.67 0.530112
Target:  5'- aGGCGGUGcGcGGCGUuuaCGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC-CuUCGCGc--GCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 61067 0.67 0.527284
Target:  5'- cGGgGGCGGGuacaGGCGCagaccgggcaggccGCGCGgCCGa-- -3'
miRNA:   3'- -CCgCCGCCU----UCGCG--------------CGCGCgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 55433 0.67 0.520706
Target:  5'- cGGCGGCGGGcccgacGGCGCG-GCGgaUCGUc- -3'
miRNA:   3'- -CCGCCGCCU------UCGCGCgCGCg-GGCAuu -5'
7728 3' -62.9 NC_001973.1 + 16313 0.67 0.520706
Target:  5'- -uCGGacCGGAcGCGUGCGCGCUCGa-- -3'
miRNA:   3'- ccGCC--GCCUuCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 103938 0.67 0.519769
Target:  5'- cGCGGCGcGggGCGUGCcgucgcgGCGCCa---- -3'
miRNA:   3'- cCGCCGC-CuuCGCGCG-------CGCGGgcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.