miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 158754 0.67 0.539579
Target:  5'- -cCGGCGaccGAGCGCGCGCcgaccuacacGCCCGa-- -3'
miRNA:   3'- ccGCCGCc--UUCGCGCGCG----------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 63637 0.67 0.539579
Target:  5'- cGGCcGCGuGggGCG-GCGCGCCgGc-- -3'
miRNA:   3'- -CCGcCGC-CuuCGCgCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 95716 0.67 0.535785
Target:  5'- cGGC-GCGGugcgccggcuguuGGCGCaggGCGCGCCCGc-- -3'
miRNA:   3'- -CCGcCGCCu------------UCGCG---CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 108440 0.67 0.530112
Target:  5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3'
miRNA:   3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 105471 0.67 0.530112
Target:  5'- cGCGGCGGGcacaugauguGGcCGgGCGCGUugccgCCGUAGu -3'
miRNA:   3'- cCGCCGCCU----------UC-GCgCGCGCG-----GGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 81102 0.67 0.530112
Target:  5'- gGGC-GCGGGcucguugaaGGCGCGCuuGCGCCCcgacGUGAc -3'
miRNA:   3'- -CCGcCGCCU---------UCGCGCG--CGCGGG----CAUU- -5'
7728 3' -62.9 NC_001973.1 + 19539 0.67 0.530112
Target:  5'- aGGCGGUGcGcGGCGUuuaCGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC-CuUCGCGc--GCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 61067 0.67 0.527284
Target:  5'- cGGgGGCGGGuacaGGCGCagaccgggcaggccGCGCGgCCGa-- -3'
miRNA:   3'- -CCgCCGCCU----UCGCG--------------CGCGCgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 55433 0.67 0.520706
Target:  5'- cGGCGGCGGGcccgacGGCGCG-GCGgaUCGUc- -3'
miRNA:   3'- -CCGCCGCCU------UCGCGCgCGCg-GGCAuu -5'
7728 3' -62.9 NC_001973.1 + 16313 0.67 0.520706
Target:  5'- -uCGGacCGGAcGCGUGCGCGCUCGa-- -3'
miRNA:   3'- ccGCC--GCCUuCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 103938 0.67 0.519769
Target:  5'- cGCGGCGcGggGCGUGCcgucgcgGCGCCa---- -3'
miRNA:   3'- cCGCCGC-CuuCGCGCG-------CGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 157883 0.67 0.538629
Target:  5'- uGCGGCucgugucGGAGGuCGCGgccgcCGCGCCCGcGAg -3'
miRNA:   3'- cCGCCG-------CCUUC-GCGC-----GCGCGGGCaUU- -5'
7728 3' -62.9 NC_001973.1 + 50281 0.67 0.539579
Target:  5'- cGGCacauGCGGAugcGGCGCuugccguucaccGUGCGCUCGUAGc -3'
miRNA:   3'- -CCGc---CGCCU---UCGCG------------CGCGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 124199 0.67 0.539579
Target:  5'- aGGUcGCGGcGGCGCGC-CGgCUCGUGAc -3'
miRNA:   3'- -CCGcCGCCuUCGCGCGcGC-GGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 6511 0.66 0.616905
Target:  5'- gGGCGGCGcGGGCGUGCcgacgauuuuGCgGCUgGUGAa -3'
miRNA:   3'- -CCGCCGCcUUCGCGCG----------CG-CGGgCAUU- -5'
7728 3' -62.9 NC_001973.1 + 44420 0.66 0.601285
Target:  5'- aGCGGCuccgcucggGGAucgaacgggcgcucgGGCGCGgGCGCUCGg-- -3'
miRNA:   3'- cCGCCG---------CCU---------------UCGCGCgCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 144160 0.66 0.597387
Target:  5'- aGCcGCaGGAcuacgAGCGCGCGCGCgCGg-- -3'
miRNA:   3'- cCGcCG-CCU-----UCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 135935 0.66 0.577961
Target:  5'- cGCGGCGauGGCGCGCcaaguGCGCCaaGUGg -3'
miRNA:   3'- cCGCCGCcuUCGCGCG-----CGCGGg-CAUu -5'
7728 3' -62.9 NC_001973.1 + 102633 0.66 0.577961
Target:  5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3'
miRNA:   3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 94286 0.66 0.577961
Target:  5'- aGGCGccgaGGGaaGGCG-GCGCGCCCGc-- -3'
miRNA:   3'- -CCGCcg--CCU--UCGCgCGCGCGGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.